BAC Information

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BAC

Clone NameMSMg01-350K24
Chromosome4 (Build37)
Map Location 66,770,930 - 66,771,165
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350K24.T7 (MSMg01no350_k24.b1)MSMg01-350K24.TJ (MSMg01no350_k24.g1)
ACCAG462240AG462241
length775799
length of high quality
(start - end)
---247 (238 - 484)
definitionCHROMAT_FILE: MSMg01no350_k24.b1 PHD_FILE: MSMg01no350_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:41 2005CHROMAT_FILE: MSMg01no350_k24.g1 PHD_FILE: MSMg01no350_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTCTCCTGTTTCTAATATAGCTGACTTTTTTTTGACATT
TAAAAGTTTTGAATCATTTTGAAATACTTTGTATTCCATTTTATATTAGG
CATGTAGATCATTGACTTTTCTCACGCTATACCAGAAGTACCCTATATCC
ACCCAACCCCACTCACCTGACCAACCACTTCCCCTTTTTGGACCTGGTGT
TCCCCTGTACTGACGTGCATATAGTTTGTGAGTCCAATGGCCCTCTCTTT
CCAGTGATGTTCGACTACGGCATCTTTTGATATATATGCACCTAGAGGCG
AGATGTCTGGAGTACTGGCTAGTTGATAATGTCTGCTCCGCCTATATGAT
TGCGGATCCCTTTAGATCCTTGGGTACTTTCTCTAGTTCCTCCATTGAGA
TCCCTGTGGACCATTCACTATGTGACTGTGAACATCCACTTCTGCGGTTG
CTAAGCCCCGGCATAGTCTCCCAAAAAAAACTACATCTGGGGCCTTTCAT
AAAATCTTGCCTGAGTTTGCCTGCGGTCCCCTATTGGGGGCCCCTTATGG
GGGGAAACCCGGGTATTAGAATTTTTCCAAATAATACCTTTTAATCTTGT
CACTATTTGTCCTCGGAACCCTCCACGGGGGGTTTGTTCCCTCTCCAAAA
AGGGTTATCTGCGGGTCTTCTTCTCTTCTTTCTCTTTTTTCTTGGGGATA
CCANTAAACCTAATTTTTCTCCCCC
NNNNCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCACCCACATCTCCCTGTA
GCAGTTTTAATTTCATCTTCTATGAAATAATTAGGTGAGGGTCATTCAGA
GATATTTTTCATAATAGTAAGATTTCACAGAATATAAAAGTCAACCCTCA
GTGGGCAAAATTTCACTAGGGCAAATTCAGAGGACTGTCTCCCTCCACTC
TTCAGCGAGAGGAGCAGCAATGCATTTTTGCACTGCTCTGAGACCAGCTG
CATTGACATTCTCCTGATTGGTGCCTTGAGGGAGGGCAAAACACTGGTGA
ATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAGAGAAT
CTCAGTGCAACTGGGTAGCTAGCCCTAAGGCTTCTATTTCCTGGAGTAAA
ATTCAGTTCCACAGACTTCACCTATTACATTATCGCATCACACTAAGACT
TTTACATAACTCTCCCATTTGTAATAACTTAGATACTCCTACCTGAAAGG
AAAGTGGCCCACTGACAAAACCCCATTGCAAGATCAAAGAAAAATAACCC
GGAGGATGGCCCCCCCTTGGTGGGTGGCCTTTTTTTTTTTTTTAAAAAAA
AAAAATTTTTTTTTTTTATCTTTTCAAAGGGATTCCCGAAAGGGCCCCTT
AATTTTTCCCCGGCCCGGGGGCCTTTTTCCACCCAATCCCCATTTTTTTG
GGCCGGGGGTTTCCCCTGTGTTGGGGGGGTATAAAAATTTTTCGAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_k24.g1 MSMg01no350_k24.g1 CHROMAT_FILE:
MSMg01no350_k24.g1 PHD_FILE: MSMg01no350_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:42 2005
         (247 letters)



>mm_chr4_66770856_66771502
          Length = 647

 Score =  398 bits (206), Expect = e-115
 Identities = 231/244 (94%), Gaps = 8/244 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccctccactcttcagcgagaggagcagcaatgcatttttgcactgctctgagaccag 60
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tctccctccactgttcatcgagaggagcagcaatgcatttttgcactgctctgagaccag 251

                                                                       
Query: 61  ctgcattgacattctcctgattggtgccttgagggagggcaaaacactggtgaatgaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgcattgacattctcctgattggtgccttgagggagggcaaaacactggtgaatgaatg 191

                                                                       
Query: 121 aatgaatgaatgaatgaatgaatgaatgaatgaatgagagaatctcagtgcaactgggta 180
           |||||||||||||||||||||||||||||        ||||||| |||||||||||||||
Sbjct: 190 aatgaatgaatgaatgaatgaatgaatga--------gagaatcacagtgcaactgggta 139

                                                                       
Query: 181 gctagccctaaggcttctatttcctggagtaaaattcagttccacagacttcacctatta 240
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 138 gctaaccctaaggcttctatttcctggagtaaaattcagttccacagacttcacttatta 79

               
Query: 241 catt 244
           ||||
Sbjct: 78  catt 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)