Query= MSMg01no351_c20.b1 MSMg01no351_c20.b1 CHROMAT_FILE:
MSMg01no351_c20.b1 PHD_FILE: MSMg01no351_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:22 2005
(388 letters)
>mm_chr4_136578303_136579090
Length = 788
Score = 743 bits (384), Expect = 0.0
Identities = 384/384 (100%)
Strand = Plus / Plus
Query: 5 gaattcttttccacttgtagccattccaccccaacccacaccttggtggctgcatgtgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttccacttgtagccattccaccccaacccacaccttggtggctgcatgtgtt 264
Query: 65 cgttcatataatcttttcagcttagtttccttaaagagcgtggctgggagcatttagccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgttcatataatcttttcagcttagtttccttaaagagcgtggctgggagcatttagccc 324
Query: 125 ggccacttgagtactggctgttttaacatttatgtcacaacaaggtacgtgggtttctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggccacttgagtactggctgttttaacatttatgtcacaacaaggtacgtgggtttctga 384
Query: 185 agggatacacgcctacaacctgagcagcaaggaggcagagggctgccctaggtccacaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggatacacgcctacaacctgagcagcaaggaggcagagggctgccctaggtccacaga 444
Query: 245 acaattgtcagtccagccatggctacacaaaagccacagaggagaagccctgctgtgaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaattgtcagtccagccatggctacacaaaagccacagaggagaagccctgctgtgaga 504
Query: 305 cgtctctcagcgcatggacagagggctggtgactcaagctaagcaggagcaggatgaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgtctctcagcgcatggacagagggctggtgactcaagctaagcaggagcaggatgaaca 564
Query: 365 gcacgggaatctgtctccatctca 388
||||||||||||||||||||||||
Sbjct: 565 gcacgggaatctgtctccatctca 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_c20.g1 MSMg01no351_c20.g1 CHROMAT_FILE:
MSMg01no351_c20.g1 PHD_FILE: MSMg01no351_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:22 2005
(342 letters)
>mm_chr4_136744121_136744862
Length = 742
Score = 642 bits (332), Expect = 0.0
Identities = 338/342 (98%), Gaps = 4/342 (1%)
Strand = Plus / Minus
Query: 1 actgctggagactttcctctcttatcgggatacaaagttgcaaataccaggctttcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 actgctggagactttcctctcttatcgggatacaaagttgcaaataccaggctttcccag 343
Query: 61 tggagaaaccacaacaaaccacacactacagcattttaggggaacagataccaggacagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tggagaaaccacaacaaaccacacactacagcattttaggggaacagataccaggacagt 283
Query: 121 gctcaggccaggaaattgcggtctttttatttattgttacaattatttaaaagcattttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gctcaggccaggaaattgcggtctttttatttattgttacaattatttaaaagcattttt 223
Query: 181 taaaatcgtttttaattgattggtgtgtgtgagtgcgtgcgtgcgtgcgtgtgtgtgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 222 taaaatcgtttttaattgattggtgtgtgtgagtgcgtgcgtgcgtgc----gtgtgtgt 167
Query: 241 gtgtgtgtgtgtgtgtgtaagcatgtatgcatgtttttatgtgtacataaacatgtgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gtgtgtgtgtgtgtgtgtaagcatgtatgcatgtttttatgtgtacataaacatgtgtgt 107
Query: 301 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 41
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
