Query= MSMg01no351_f08.b1 MSMg01no351_f08.b1 CHROMAT_FILE:
MSMg01no351_f08.b1 PHD_FILE: MSMg01no351_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:33 2005
(539 letters)
>mm_chr4_82007828_82008766
Length = 939
Score = 990 bits (512), Expect = 0.0
Identities = 530/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcactaggttcaatttgtttcagttgtttcagagatgactgagaaaccaacca 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctcactatgttcaatttgtttcagttgtttcagagatgactgagaaaccaacca 263
Query: 65 gaactctaaaaggtgttagacgtcataaacgcaaaaaaaaaaaaaaaaaaaa-ggaaaaa 123
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 264 gaactctaaaaggtgttagacgtcataaatgcaaaaaaaaaaaaaaaaaaaaaggaaaaa 323
Query: 124 agaagggggtagcattgataccattctcctggatgggaacaagaggttttaatgctccag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaagggggtagcattgataccattctcctggatgggaacaagaggttttaatgctccag 383
Query: 184 gccactgcagattgtgtagttttgttgaccagcttattaaagatgactttgaacgcattt 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccactgcagattgtgtagtttggttgaccagcttattaaagatgactttgaacgcattt 443
Query: 244 aatatgtcaagcagaagggcaccggttatttagcatctctgcagccaatcactgtcctac 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 aatatgtcaagcagaagggcaccggttatttaacatctctgcagccaatcactgtcctac 503
Query: 304 tctctagctcatcctgttacgtgctgctttcaactctccatgtcctgctgaatgataaca 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 tctctagctcatcctgttacgtgctgctttcaactctacatgtcctgctgaatgataaca 563
Query: 364 caccctgacattctctgccctacccccatcctctgcttcctctgaccctggctggcaaac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caccctgacattctctgccctacccccatcctctgcttcctctgaccctggctggcaaac 623
Query: 424 ataatgcagatcctctctgctcacatcacacctacttagtcctgattttacacattacac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataatgcagatcctctctgctcacatcacacctacttagtcctgattttacacattacac 683
Query: 484 attcagattttccaagatatttgttttcaagtattaaattctttgttggattatca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attcagattttccaagatatttgttttcaagtattaaattctttgttggattatca 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_f08.g1 MSMg01no351_f08.g1 CHROMAT_FILE:
MSMg01no351_f08.g1 PHD_FILE: MSMg01no351_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:33 2005
(531 letters)
>mm_chr4_82200710_82201640
Length = 931
Score = 1004 bits (519), Expect = 0.0
Identities = 528/531 (99%)
Strand = Plus / Minus
Query: 1 tcccgtttaaagatatctggccaagactaaaaatctcagcttgtctcagaaagtagagat 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 731 tcccgtttaaagatatctggccaagactaaaaatctcagcctgtctcagaaagtagagat 672
Query: 61 gtatatttctgaaatcttttcaggtgttcatagaactatggaaaagatggcccctaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtatatttctgaaatcttttcaggtgttcatagaactatggaaaagatggcccctaagta 612
Query: 121 agatttctaaggtctagcaaagttcttgttccaggtctcagggagactcttgtcccacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agatttctaaggtctagcaaagttcttgttccaggtctcagggagactcttgtcccacgg 552
Query: 181 ggcagaagaaacatttgttccatcatgcttctacaaagcaatgggactgaagttagagta 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 551 ggcagaagaaacatttgttccatcatgcttctataaagcaatgggactgaagttagagta 492
Query: 241 gccatgttctggccacttcaagtgggagcagagcctgctggtgtgtgggaaggtagttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gccatgttctggccacttcaagtgggagcagagcctgctggtgtgtgggaaggtagttta 432
Query: 301 ctctcagagcctctagcactgtccacaaaattaagacacagttggagaaagaaaagagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctctcagagcctctagcactgtccacaaaattaagacacagttggagaaagaaaagagcc 372
Query: 361 tttgcactgagaaacaggaaataaataaaatgttatacagaattaattgcctcattgtag 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 371 tttgcactgagaaacaggaaataaataaaatgttatgcagaattaattgcctcattgtag 312
Query: 421 agatgacaagaaacaaattagcggtttcaaaactttattttagtagcaaaatctcttttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agatgacaagaaacaaattagcggtttcaaaactttattttagtagcaaaatctcttttc 252
Query: 481 aaagcaaaatttcccaataaaataccaaacacgtactgagcgcttgacatg 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaagcaaaatttcccaataaaataccaaacacgtactgagcgcttgacatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
