NNNNNNTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAAATTGCTGGTGCCAAACAGCCTGGTGGGTGAAATGC
CATCATGTAAGTTATTTTCTTTGTTGTTGTTATAAGTAATTTACAGTTTC
AAAATCATGTAAAATTTTTAATATTTTTAATAAGTAGTGTAATTTGTTAA
GTCAAAATAAGTGAAGGTCTTAGTTTCTTAAGAAAAAAATCTTTTTTTGA
CTTTTATTGAAATGTATATTTCATACTTATTGTAAATCGGATGTTCCTTT
CAATGTAAACAGCCCAGTGCACACATTTGCAACATGGCATCTGCATCTAT
TGGTCATAGAACATCACATAAGGAAAGATGGAAAGATTACAAATATAATA
CCAGAAAGTCTGCTATAAAACAACCTCTCCTTAGAAATTAATGCATAAAC
AAGAAAGGGACAATAGCAATATCAATGGACATGTTAGTTTTCAAAAATTA
AATTTCTTGGGATCCTACCCTTAGACAAAAAACTACAGGCAGACAATGAA
TGCTGGCAGAAGGAGAATTAGCCCTTCCAAGGGTGAGCCCCTTTATTAAT
TATACAGAGCAGAGTAACTGATCAACCCTGAAACCATACACACACACACA
CACACACACACACACACACACACACACACACACAAACACAAACACAAACA
CAAACACACCAACTAAAAACGCTATAAAAAAATGTAACCTN

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCAA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCCAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGGGTGGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTATTACCAGAG
GATCCAGCAATACCTCTCCTGGGTATATATCCAGAAGATGTCCCAACCGG
TAAGAAGGACACATGTTCCACTATGTTCATAGTAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGAATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
AGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAGAAACTTANGATACCCAAGATGTAAGATACA
ATTTGCTTAAAGCATGAAACTCTCGAAGAACGAAGAACACAGTGTGGAC

Query= MSMg01no351_h04.b1 MSMg01no351_h04.b1 CHROMAT_FILE:
MSMg01no351_h04.b1 PHD_FILE: MSMg01no351_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:41 2005
         (645 letters)



>mm_chr4_89582045_89583089
          Length = 1045

 Score = 1114 bits (576), Expect = 0.0
 Identities = 585/588 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaattgctggtgccaaacagcctggtgggtgaaatgccatcatgtaagttat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggaattcaaaattgctggtgccaaacagcctggtgggtgaaatgccatcatgtaagttat 529

                                                                       
Query: 64  tttctttgttgttgttataagtaatttacagtttcaaaatcatgtaaaatttttaatatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tttctttgttgttgttataagtaatttacagtttcaaaatcatgtaaaatttttaatatt 469

                                                                       
Query: 124 tttaataagtagtgtaatttgttaagtcaaaataagtgaaggtcttagtttcttaagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttaataagtagtgtaatttgttaagtcaaaataagtgaaggtcttagtttcttaagaaa 409

                                                                       
Query: 184 aaaatctttttttgacttttattgaaatgtatatttcatacttattgtaaatcggatgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaaatctttttttgacttttattgaaatgtatatttcatacttattgtaaatcggatgtt 349

                                                                       
Query: 244 cctttcaatgtaaacagcccagtgcacacatttgcaacatggcatctgcatctattggtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cctttcaatgtaaacagcccagtgcacacatttgcaacatggcatctgcatctattggtc 289

                                                                       
Query: 304 atagaacatcacataaggaaagatggaaagattacaaatataataccagaaagtctgcta 363
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 atagaacatcacataaggaaatatgaaaagattacaaatataataccagaaagtctgcta 229

                                                                       
Query: 364 taaaacaacctctccttagaaattaatgcataaacaagaaagggacaatagcaatatcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 taaaacaacctctccttagaaattaatgcataaacaagaaagggacaatagcaatatcaa 169

                                                                       
Query: 424 tggacatgttagttttcaaaaattaaatttcttgggatcctacccttagacaaaaaacta 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 168 tggacatgttagttttcaaaaattaaatttcttgggatcctacccttagacaaagaacta 109

                                                                       
Query: 484 caggcagacaatgaatgctggcagaaggagaattagcccttccaagggtgagccccttta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 caggcagacaatgaatgctggcagaaggagaattagcccttccaagggtgagccccttta 49

                                                           
Query: 544 ttaattatacagagcagagtaactgatcaaccctgaaaccatacacac 591
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  ttaattatacagagcagagtaactgatcaaccctgaaaccatacacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)