NNNNNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTTTTCTCAGGACTGACTTATGAGTTCTGGAACCCG
TGTACCTGTCACTTCCACTGTATCATTATACTTCACCCTCATTTGCTCTG
ATAACAGGTGATTGGTTTTTAGTGATTCTTCTGCACATGAGGAAGTCTAG
TGGCCCCTGATTTAGGGACTATTCCTTGGCAATTCTTAGTCTAATTTTAC
TTTGAACTAGAAGAGTGTTTCATTTCTTGAGATTTCCTTGGTCTGTCTGA
ATAGATGGGACCTAATTACAAAGATTTTGGTTGATGATAAGAACTTGTTA
AAACATGGTGTGACTACATTGGCACATTTGTCTTATGTAAAGGAAGGTAC
ATCAGGACAAACAATAAATATGCTTGTAGCTATTCCACTCATCACATTAA
ATTTGTGTTTTCXXXXXXXXXXXXXXXXXXTCAAGTTTTGTTAGGGTGAA
ATCTCTCGAAACTGTTTCTTATGCTCTAGTCATCTTTCCCTCATGGATGA
TCTAAGATACCATCATTGACTTGAGGCAGACCACGTGTCCAAGGATACTT
GGAGGTAGTTTTGTTTCGTGATGAAACACATGAGAAGGATGTAAATGGAA
GGACTCCTGGAGTTAAGATTTTAATATTTCAGTTGTAGGGAGCTCTCTTT
GAAAAAATAGCTCTTTATACGGATTTGGTGTGAAAAG

NNNTTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCTGAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAAGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCAC
TCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGAACCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAC
CGATAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACTCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATTTACAAAAAGGAATACTACTCAGCTATTAAAAA
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGAAGGGCATCATCC
TGAGTGAGTTAACCCAATCACAAAGGAACTCGTNACATATGTACTCACTG
ATAAGTGGAAATTATCCCACGAAATTATGATACCCCCGATAATAGAAACA
AATTGCTTAATGCCTGAAATTCAGAAAAAGAAAACCAAGTGGGGACCTTT
TGCCCCA

Query= MSMg01no351_i19.b1 MSMg01no351_i19.b1 CHROMAT_FILE:
MSMg01no351_i19.b1 PHD_FILE: MSMg01no351_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:49 2005
         (409 letters)



>mm_chr4_28821920_28822731
          Length = 812

 Score =  731 bits (378), Expect = 0.0
 Identities = 400/408 (98%), Gaps = 3/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttt-ctcaggactgacttatgagttctggaacccgtgtacctgtcacttcc 63
           |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcacttttccacaggactgacttatgagttctggaacccatgtacctgtcacttcc 264

                                                                       
Query: 64  actgtatcattatacttcaccctcatttgctctgataacaggtgattggtttttagtgat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgtatcattatacttcaccctcatttgctctgataacaggtgattggtttttagtgat 324

                                                                       
Query: 124 tcttctgcacatgaggaagtctagtggcccctgatttagggactattccttggcaattct 183
           |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 325 tcttctccacatgaggaagtctagtagccactgatttagggactattccttggcaattct 384

                                                                       
Query: 184 tagtctaattttactttgaactagaagagtgtttcatttcttgagatttccttggtctgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtctaattttactttgaactagaagagtgtttcatttcttgagatttccttggtctgt 444

                                                                       
Query: 244 ctgaatagatgggacctaattacaaagattttggtt--gatgataagaacttgttaaaac 301
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 445 ctgaatagatgggacctaattacaaagattttggttaagatgataagaacttgttaaaac 504

                                                                       
Query: 302 atggtgtgactacattggcacatttgtcttatgtaaaggaaggtacatcaggacaaacaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggtgtgactacattggcacatttgtcttatgtaaaggaaggtacatcaggacaaacaa 564

                                                           
Query: 362 taaatatgcttgtagctattccactcatcacattaaatttgtgttttc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaatatgcttgtagctattccactcatcacattaaatttgtgttttc 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 812
Length adjustment: 9
Effective length of query: 400
Effective length of database: 803
Effective search space:   321200
Effective search space used:   321200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)