Query= MSMg01no351_j03.b1 MSMg01no351_j03.b1 CHROMAT_FILE:
MSMg01no351_j03.b1 PHD_FILE: MSMg01no351_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:50 2005
(553 letters)
>mm_chr4_96452618_96453570
Length = 953
Score = 1023 bits (529), Expect = 0.0
Identities = 544/549 (99%)
Strand = Plus / Plus
Query: 5 gaattcaagggtgattcctgttatgctcagactttctgtgaatgcagaatacaaagtgat 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagggtgattgctgttatgctcagactttctgtgaatgcagaatacaaagtgat 264
Query: 65 tgaagaagctctgtatattgaaaaagggatacattctctccagtctatacccacagctac 124
||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 265 tgaagaagctctgtatattgaaagagggatgtattctctccagtctgtacccacagctac 324
Query: 125 caactctgcaaatgaaaaccagcttgagataactcctgggtgtttaaactggagggactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caactctgcaaatgaaaaccagcttgagataactcctgggtgtttaaactggagggactc 384
Query: 185 taggtgaacctgactgaccccttctttgcagagagttggagaggcctctagaacgtactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taggtgaacctgactgaccccttctttgcagagagttggagaggcctctagaacgtactc 444
Query: 245 ttctttaaacactggctttacagatgggaaattaaactctagagagggtatgctgcctca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctttaaacactggctttacagatgggaaattaaactctagagagggtatgctgcctca 504
Query: 305 ccaaggaattccaggtgggaggaggaagcagaaggcagaggtatttctagtgttctgttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaaggaattccaggtgggaggaggaagcagaaggcagaggtatttctagtgttctgttc 564
Query: 365 tgatagcagggaccttcccatgatttcagttcacttagtgtggacagcactaacacccca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatagcagggaccttcccatgatttcagttcacttagtgtggacagcactaacacccca 624
Query: 425 gaagagacctcatcctgcccaccgcaggctctttgaagctataggggtggaaagccaacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagagacctcatcctgcccaccgcaggctctttgaagctataggggtggaaagccaacc 684
Query: 485 aaggatttgagaccatcttgtcctacttgccccgcagtggggcatcagccttgagaccat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaggatttgagaccatcttgtcctacttgccccgcagtggggcatcagccttgagaccat 744
Query: 545 ccccaggag 553
|||||||||
Sbjct: 745 ccccaggag 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_j03.g1 MSMg01no351_j03.g1 CHROMAT_FILE:
MSMg01no351_j03.g1 PHD_FILE: MSMg01no351_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:51 2005
(547 letters)
>mm_chr4_96621879_96622826
Length = 948
Score = 967 bits (500), Expect = 0.0
Identities = 540/556 (97%), Gaps = 10/556 (1%)
Strand = Plus / Minus
Query: 1 caagcttagaaaatatgttcactaaaaatgaaaatgtgcaagccaggcatgttggctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 caagcttagaaaatatgttcactaaaaatgaaaatgtgcaagccaggcatgttggctgat 696
Query: 61 gtctctaatcc----tagtaccttgaagggtgggacaagaggatcattttagttttaagg 116
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtctctaatcctagttagtaccttgaagggtgggacaagaggatcattttagttttaagg 636
Query: 117 ctagactagactaaatagcatacttcaaaatctaaaat-aaaaaataaactaaatttaat 175
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 635 ctagactagactaaatagcatactccaaaatctaaaataaaaaaataaactaaatttaat 576
Query: 176 gtattcaatctgtattaaccatagcccatttggaaaataat-gacgcattaggaaattca 234
|||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 575 gtattcaatccgtattaaccatagcccatttggaaaataatgga-gcattaggaaattca 517
Query: 235 ttgtaagagatacatttgaaaatcatactgagttatacttgcacatcaaaaggatagctt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttgtaagagatacatttgaaaatcatactgagttatacttgcacatcaaaaggatagctt 457
Query: 295 atgaaatccagaaatataatcctcactgaaaaaatagtttatagtttataaaatgttgaa 354
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 456 atgaaatccagaaatataatcctcactgaaaaagtagtttatagtttataaaatgttgaa 397
Query: 355 gaatgagagaggcataggtgatgtgaaagcagaaagcagatatattggaagcagaaaggg 414
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 396 gaatgagagaggcataggtgatgtgaaagcagaaagcagatatattgaaagcagaaaggg 337
Query: 415 tgttgcaggatatttgattacactgtgaaccccgagattgtgtt--ttaataaaaaaa-t 471
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
Sbjct: 336 tgttgcaggatatttgattacgctgtgaaccccgagattgtgttatttaataaaaaaaat 277
Query: 472 cccatatctagttgtggtgtggctcatcccttagcacataccattaattctagacaatga 531
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 276 cccatatctagttgtggtgtggctcatcccttagcacataccattaattccagacaatga 217
Query: 532 acataatctactttgt 547
||||||||||||||||
Sbjct: 216 acataatctactttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space: 503706
Effective search space used: 503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
