AAAAAAAATTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTTCCTTCCTCCTATGGTTAAGCTCTTTCTGGGCA
GACAGATGAAGCTCAGTACAATGTCTTATCACCTATAGCAAAGACCATGC
AATTAAGGCCATAGCCTGCTTACTATCATATTCAGGGAATGTGATAGACC
ATCTGGTCCATTAGCTAGTTAAAGAGCATCTCCTCTCTCATGTCATAGAC
TTCAGCCATCCAGAAGGAATGCCACCACATTCTACATAGAGGAAGGTTGG
CTATCTTAACTCTGGTATATCTTACAAGGATGCTGAACTCTAAGGTGGCT
CAGTCTTGGTTGCCTCGTCCATAGCAGGAGAGAATGGAAGCACAATAAAA
GTCGTGTCAGGATTGTATGCAAAATATGCTTCACCCTCAGATGGATCAAT
CACAGTAGCCTGTCTTATTATCCACCACAAAGGAGCACATAGCTGCCCCT
CCCTGATGGTGTGTGTACCGGAGGCTATCCAGGGAGATCTCTGGCCTAGC
CTGGTGAGAGGGTTCAAGCCAAGGGGAAAGGGTATGCCCCACTGCTGCTG
CCGCTGCCGCTGCTGCTGCTGCTGCTGCCACTTCCCACACAGCTGCTGTT
GCTCTGAAATGCTGCACTGTCTGTGCTGAACCATGTTGACCAAGCCAAGC
TGAGTCCAGGGAGTGGTGGG

GGGGGGACTCGATTAAATGTGAAGTTTGGAAXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCCTGTTTCAACAGTCC
GAGGGTCTAGATAATACGTGCTCGAAATAAAGAAGTACTGAGCGATAGGA
TGTTATAACTTTTTTACTGGCTGGCTCCCTAAGGTTCTCTCCAACCGCAG
TTCGCCCGGAGACAACCCATCCAATGTTTGTAATACGCCAGAGCCGTGAC
GAATTCATCTCACTGGCTATACTTTATTTAAAAGTTTCTTCAGTTGTACT
CGTACTAACCTATCGCCACATTACCCACACATTTATCCGTGAGGCAGATG
CTTCTTTACTGTCACCTTTACCTCCGCTCGTTCTCAACGCCCTTAACGGA
TGATGCCGACGCCTGAAACTAGAATGTCTTCTCCCCCTCAATTCAACATG
CAGCTATCTACTTGTATATATGGATCTACTTTTCTAAATCCCCGACTCCT
TTCGTTCCACCGTATACCGTACCTCCGTATACCAATAACATACTTACCTA
TATACACAGCTGCTACCCTCCCTATTATCCGTATTCCTTTCGACTCCCCT
TTCAATTTATTACCAATTACAATAACATTAACTCTCTACCTCGTCAGAAA
ACTATTGAATCACAGTAACACCTCTACTACACACCATCCATAATACAGAA
CTTAGCCGTCTACACCCCTTGCCTAGTCCCTGTCCACCTTGCGCACCCCC
CTTCAGCTTGCGGCTCACCATCCCCTCACTTCCTTCTTTTTAACTTACTT
CCCCCTCTC

Query= MSMg01no351_k13.b1 MSMg01no351_k13.b1 CHROMAT_FILE:
MSMg01no351_k13.b1 PHD_FILE: MSMg01no351_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:57 2005
         (576 letters)



>mm_chr4_102952141_102953117
          Length = 977

 Score =  760 bits (393), Expect = 0.0
 Identities = 405/409 (99%), Gaps = 1/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttccttcctcctatggttaagctctttctgggcagacagatgaagctcagta 63
           |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 ggaattccttccttccttttatggttaagctctttctgggcagacagatgaacctcagta 553

                                                                       
Query: 64  caatgtcttatcacctatagcaaagaccatgcaattaaggccatagcctgcttactatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caatgtcttatcacctatagcaaagaccatgcaattaaggccatagcctgcttactatca 493

                                                                       
Query: 124 tattcagggaatgtgatagaccatctggtccattagctagttaaagagcatctcctctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tattcagggaatgtgatagaccatctggtccattagctagttaaagagcatctcctctct 433

                                                                       
Query: 184 catgtcatagacttcagccatccagaaggaatgccaccacattctacatagaggaaggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgtcatagacttcagccatccagaaggaatgccaccacattctacatagaggaaggtt 373

                                                                       
Query: 244 ggctatcttaactctggtatatcttacaaggatgctgaactctaaggtggctcagtcttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggctatcttaactctggtatatcttacaaggatgctgaactctaaggtggctcagtcttg 313

                                                                       
Query: 304 gttgcctcgtccatagcaggagagaatggaagcacaat-aaaagtcgtgtcaggattgta 362
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 312 gttgcctcgtccatagcaggagagaatggaagcacaataaaaagtcgtgtcaggattgta 253

                                                            
Query: 363 tgcaaaatatgcttcaccctcagatggatcaatcacagtagcctgtctt 411
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgcaaaatatgcttcaccctcagatggatcaatcacagtagcctgtctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space:   547322
Effective search space used:   547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)