BAC Information

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BAC

Clone NameMSMg01-352A08
Chromosome4 (Build37)
Map Location 125,392,722 - 125,393,067
singlet/doubletsinglet
Overlap genenone
Upstream geneSf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352A08.T7 (MSMg01no352_a08.b1)MSMg01-352A08.TJ (MSMg01no352_a08.g1)
ACCAG463252AG463253
length789793
length of high quality
(start - end)
318 (79 - 396)326 (83 - 408)
definitionCHROMAT_FILE: MSMg01no352_a08.b1 PHD_FILE: MSMg01no352_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:24 2005CHROMAT_FILE: MSMg01no352_a08.g1 PHD_FILE: MSMg01no352_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGAGACGGA
CCGCGGAATTCCAGAGTTCCCGAACTGTCAGCATCCTGAAATACTTAGCT
TCCTGTCCCATTGCCTAGCAAGGCTCAGGCAAGATCCCAACAACCAGTGG
AAGGAGAGGCACCCAAGACCCGAAGGACTTTGTTAGCGTGGAGCTACAGC
CAGGTAAGGCGACACAGAAAGGTCCAGGATTGAAGGATGTCTGCCCATCA
TTGGGAGAAGTCTTGGGAGTGAGCATACCGGGCTTCAGGGAGAACTCCAG
GTCCAGCAGAGAGTGAGGAGAAAGTTTTTTATGGTTGGGGTGAGGTAGAG
CTGCCCACCCATCCACCCATTCATTGAGGTTGTTAACATTTTATGCAAGA
ATTCCGGTTCCACCACCTCCTGCCCGTGTAACCTTGAACAAACTACTGCG
TACCCTCTGCCTCACGTACCTTATCTGTGACTCCTCTGATTCCGAGCACT
GACCCCCCTCCTACAACTTACCCAATACCGCTTTTTCATTCACCTTGGGC
TCGTCCTAAGCCCCCCTCCTTCCCTCCTCCCTTTCGCATCGCCCCTTTTT
TCCTTGCCCCTTTCCACCACATTCTTTCCTTCTGCCCTTGCTTATTTCTT
TTCTTTTTCATTCTCTCCTCTCTTCATCTCTCTTTCCGCCTCCCCCTTTT
AATTCCACCCCCTTTTCCCCCGCCCCGTATTTTTTATTCCCTCCCTCCCC
CCCCCCTTTTTTTTCCCCTTCCCTCCTCCCCTTCCCTTN
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGTGTACATGCATGT
GTATGGAGGTCAGAGGACAACCTTGGGTGTTGTACACTGGCTTGGAATCT
GCCAGTTAAGCAAGGCTGGCTGCCCAGCAAGTGTCAGGGATGTGTCCGTT
TCTACCTCCCCAGCCCTGGGATTATAGGCAAATATCAGCATGCCTGATTT
CTTTTTTAAATGTGGGTTCTGGAATTGAACTCAGATACTTGGGAGAACTT
TGCTGACAGGACTATCTTGCCAGCCGCACGTCCTTGCTGACTGTGTGGGT
ATAGGTAAATGTACATTTGTACCCACATCCCAGAGTTTTGGCTTATTCAG
GTTCCTGAGCCCAGTACCCACTTCACAGGTTCCTAGCTGACCGTCTTGAT
GACCAGGTTGCATTATGCTTATACTGCCTTTTGCCTTTATGACTTACCCA
TTCAACGTCCCATTCCCCCGCTCTTCTCTGTACACCCCTCCATACCACTC
TTTTCCCCCTTTTCTTTTCCTTTTTTTTTCCCCCTCCCTCTCCCCCTTCC
CTTCCTTTCTTCCTCCTTTTTTTCTTCCCTCTTTCCCATATTCCTTTTTT
CCTTTTTTTTCTCCCCCATTTTCCTCTCCTTCTCCATTTTCTTCTCTCCC
CCCTCCCTTCATCCTCTCCCCACTTTTCCCATCCTATTTATCAACATACT
CCCCTCGTCTCTTCTTTTCACGCCTACCCTTCCCCCTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_a08.b1 MSMg01no352_a08.b1 CHROMAT_FILE:
MSMg01no352_a08.b1 PHD_FILE: MSMg01no352_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:24 2005
         (318 letters)



>mm_chr4_125392518_125393235
          Length = 718

 Score =  507 bits (262), Expect = e-148
 Identities = 311/348 (89%), Gaps = 36/348 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   atcctgaaatacttagcttcctgtcccattgcctagcaaggctcaggcaagatcccaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atcctgaaatacttagcttcctgtcccattgcctagcaaggctcaggcaagatcccaaca 264

                                                                       
Query: 65  accagtggaaggagaggcacccaagacccgaaggactttgttagcgtggagctacagcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accagtggaaggagaggcacccaagacccgaaggactttgttagcgtggagctacagcca 324

                                                                       
Query: 125 ggtaaggcgacacagaaaggtccaggattgaaggatgtctgcccatcattgggagaagtc 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 ggtaaggcgacacagaaaggtccaggattgaaggatgtctgcccatcactgggagaagtc 384

                                                                       
Query: 185 ttgggagtgagcataccgggcttcagggagaactccaggtccagcagagagtgaggagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgggagtgagcataccgggcttcagggagaactccaggtccagcagagagtgaggagaa 444

                                                                       
Query: 245 a----------gtt----t----ttta----------------tggttggggtgaggtag 270
           |          |||    |    |  |                |||||||||||||||||
Sbjct: 445 aagaggccatggttggggtgaggt--agagcaaggggggcggatggttggggtgaggtag 502

                                                           
Query: 271 agctgcccacccatccacccattcattgaggttgttaacattttatgc 318
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agctgcccacccatccacccattcattgaggttgttaacattttatgc 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)