BAC Information

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BAC

Clone NameMSMg01-352E04
Chromosome4 (Build37)
Map Location 26,142,783 - 26,143,154
singlet/doubletsinglet
Overlap genenone
Upstream geneFhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352E04.T7 (MSMg01no352_e04.b1)MSMg01-352E04.TJ (MSMg01no352_e04.g1)
ACCAG463431AG463432
length752755
length of high quality
(start - end)
370 (55 - 424)373 (84 - 456)
definitionCHROMAT_FILE: MSMg01no352_e04.b1 PHD_FILE: MSMg01no352_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:44 2005CHROMAT_FILE: MSMg01no352_e04.g1 PHD_FILE: MSMg01no352_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGCAAACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAGTCCTATACCTAAATGTAATAAAACAATTTACTG
CAAACCAATAGTCAATATCAAATTAAATAGAGAGACACTTGAAGCAATCC
CACTAAAATCATGGACAAGGAAGCTCACTCTCCCCAAATCTATTCAATAT
AGTACTTGAAGTTCTAGCTAGAGAATAAGACAACAAAAGGAGATCAAGGG
GATACAAATTGGCAAAGAAGAAATAAAGGTGTCACTATTTGCAGGGTTAT
GATAGTATACATAAGCTACCCCAAAATTCTACCAGAGAACTTCCACAGCT
GGTAAACAACTTCAGCAAAGTGGCTGGATATCAGATTAACTCATATAAAC
CAGTAATCTTCCTTTATACCAATGAATAACATTAGAGAAACAACTACCAT
TCACAATAGGCCCCAAATAGTATAAAATATCTTTGCAGGACCTTGTAGCC
AAACAAGCTGAAAGAACTCTATTGACATTAATTTCTAGCCTCTCCAAAGA
AAAAATTCAAGAAATTCCAAAAAGGGGGAAGGAACTTTTACGGGCCCAGG
GAATGGGCCCGAATTTATACTAATCAATACAGGGGGCAATCCCCTACCAA
AGAGGGATTCCTCACCAAATTTCACGGGGGCTATTCTTTTTTTCATAAAA
CCTCCCCACCCATAATTTTTTCATAAAGATACTGGGGAAAGGAGAGCCCT
TT
NNNTTGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATGCTTTCCAA
AGTGGTTAGACTAGTTGCATGGCCTTATGATATGGATGAAATACAATCTT
GCAAAAGTAATAAAATGTAACTGTATTAGATTTTAGGGCTAGATGGTCAA
ATTATCATTGAAATTCTATTTTAAGTAATTTTGGTAAAAATGCATTTATA
TCTGCCACCATGCACAAAGTTGATCAGCTATTCAGATATAACTAATTTGC
ATTATTTTGAAAGTATACAAACTACTGTGTATCAGAGTATCTCTTCCAAG
TATAAAATACAAAAATAGTCAATTAACTTATATTTCTGATTATTTAATTA
TATTACTACCAGCATTGCTATCATCCTTTACAAATAATAGCATAAGCCAA
GAGAAGACATTAGGTGAAAATGTGGGTACTTCTGGCTAAGAAGGACTTGA
GAAGGGAGAAATCCAATAAAGGGTAATTTTAATTGGGCTTCCTTTTGGGT
ACCCCTCTCTTACATCCTCCTTTCGTTCTTCTCCATTCTCTTCTCCTTTT
TCCTTTTTCCCTTTTCCTTTTTCTCCCTCCCCCTTTCCCCCCCTCTCCCT
CTTCTTCCCTCCCCCCCTCCTTTCTCCCCTTCCCCGCTTTCCCCTACCTT
TCTTTTCTTTTTTTTCCCTCTCTCCTCTTTTTCCCCCTTCTTTACCCCTC
CCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_e04.g1 MSMg01no352_e04.g1 CHROMAT_FILE:
MSMg01no352_e04.g1 PHD_FILE: MSMg01no352_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:44 2005
         (373 letters)



>mm_chr4_26142583_26143355
          Length = 773

 Score =  712 bits (368), Expect = 0.0
 Identities = 371/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagaatgctttccaaagtggttagactagttgcatggccttatgatatggatgaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tccagaatgctttccaaagtggttagactagttgcatggccttatgatatggatgaaata 513

                                                                       
Query: 61  caatcttgcaaaagtaataaaatgtaactgtattagattttagggctagatggtcaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caatcttgcaaaagtaataaaatgtaactgtattagattttagggctagatggtcaaatt 453

                                                                       
Query: 121 atcattgaaattctattttaagtaattttggtaaaaatgcatttatatctgccaccatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atcattgaaattctattttaagtaattttggtaaaaatgcatttatatctgccaccatgc 393

                                                                       
Query: 181 acaaagttgatcagctattcagatataactaatttgcattattttgaaagtatacaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acaaagttgatcagctattcagatataactaatttgcattattttgaaagtatacaaact 333

                                                                       
Query: 241 actgtgtatcagagtatctcttccaagtataaaatacaaaaatagtcaattaacttatat 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 332 actgtgtatcagagtatctcttccaagtataaaatacagaaatagtcaattaacttatat 273

                                                                       
Query: 301 ttctgattatttaattatattactaccagcattgctatcatcctttacaaataatagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttctgattatttaattatattactaccagcattgctatcatcctttacaaataatagcat 213

                       
Query: 361 aagccaagagaa 372
           ||||||||||||
Sbjct: 212 aagccaagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)