NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTATCTTAACTTACTTCATTAATAGAGCTGTGGGATAGTAAG
CCAAATAAGCCCTTTCTTTCCCAACTTGCTTTTTGGTCATGGTGTTTTTT
CACAGCAATAAAATCCCTAAGAAGGCAGTACATCAGAATGATTACACCTT
AAAATATCACACCCAGTAACTTGGAATCAACATTAGAAGCAGTTGTTTTT
CAAATAATTTCAGATAGGGTGTTATGTATCTCTGATAGCCTCTCATTTAT
TTTATATACAGTGATGATTTTGATAATGAGGATTACAGGTAGATGTCCCA
AAACATCGTGTATGTAGTGATGGGGAATACTCCATACATGCTAGACTAAT
ACTCTGGTAAATGAAATACATTCCTAATGCTTAGAAGAATATTTTGGTTG
GAAAGAAATATTGCTCTTTTTGTGTTGGAAATGTTCTAAGCTTTGATATG
ACTCTCAATATAGNTTTATTTCTCACTAACTTAATGATGCTAACTTAACG
TGCCACTAATGCATCCGTGCCCTGATTAAAACCTGCGATCTCTGGCTCCT
TTTTAAATGAACATTTGGTCACACTTATGGCCATTTTCCTCGCCCCACCA
TTCCTTTTTCCCCTCCCATAAATCCTCCTCCTATCCCCTCTTTTTATATT
ACCTCCCCTTTCACCCTCTTCTTTTTTTATTTCAACCTCCCCCTCCCTCC
TATATGTACCCTTCTCTACCCTTATCCTTG

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCATGTTTTACAAGAGAGA
TATTTGCTGATGTTTGGTCTTTTGTATGAATTATAATATTAAATTCTGTA
TCCCATGTTCTACTTCCCTCAAGATGAGTGAATTATCATGTACATAAGCT
TGTGTTGTGCAGTCCTTGTCTTTTAATTTAAAATTTTGGATGAATACAGA
TGGCTATTGCCAGTTACTTAAAGGAACAGAAATAGTCAAGTTTTCAGGTA
CCTGGTTGGGAATTATAGGAAGAGAGGAGAGAAAACTGCATGGGACAGAG
GAGGAAGCCACCATGAGAGGAGATAAGCCATGAGCACAAGGCCAGGAGAA
ACAGCAAGTATTTGGGGTATATCACTGAGGAAGTAGCCAGTCCAGCAGTT
ACAAAACTATATTGCGTGTTACCCTCCCATTTTTCCAGCCATATAATATT
AACATCCTGGTCTTCTTCCATCTGTTTGCTAAAAAGGAAAAACCTCCCCT
GGGTCTCAATTTCGGGTATTATTTTCCTTTTCTTTTCGGCTTTTTTTTCT
CCTTCCTTCCTTCTTCTTCCTTTATTTTTCCCTCTTTCCTTACTACTTTC
TCCTTTTCTCCCCTTCCTTTTTCCCTTCCTCTCCCACTTCATCCCCCCCC
CCTCCCTTTCTACCCTTCCCCCTTTATCTCCTCCTTCTTATTTCTTCTTA
TTTCTCCTCTTCTTCTATTCCCCCTATCTTTCTCCCTCCCTGT

Query= MSMg01no352_e18.b1 MSMg01no352_e18.b1 CHROMAT_FILE:
MSMg01no352_e18.b1 PHD_FILE: MSMg01no352_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:47 2005
         (451 letters)



>mm_chr4_72359520_72360370
          Length = 851

 Score =  818 bits (423), Expect = 0.0
 Identities = 441/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatcttaacttacttcattaatagagctgtgggatagtaagccaaataagccc 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattcctatcctaatttacttcattaatagagctgtgggatagtaagccaaataagccc 710

                                                                       
Query: 65  tttctttcccaacttgctttttggtcatggtgttttttcacagcaataaaatccctaaga 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttttttcccaacttgctttttggtcatggtgttttttcacagcaataaaatccctaaga 650

                                                                       
Query: 125 aggcagtacatcagaatgattacaccttaaaatatcacacccagtaacttggaatcaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aggcagtacatcagaatgattacaccttaaaatatcacacccagtaacttggaatcaaca 590

                                                                       
Query: 185 ttagaagcagttgtttttcaaataatttcagatagggtgttatgtatctctgatagcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttagaagcagttgtttttcaaataatttcagatagggtgttatgtatctctgatagcctc 530

                                                                       
Query: 245 tcatttattttatatacagtgatgattttgataatgaggattacaggtagatgtcccaaa 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 529 tcatttattttatatacagtgatgattttgagaatgaggattacaggtagatgtcccaaa 470

                                                                       
Query: 305 acatcgtgtatgtagtgatggggaatactccatacatgctagactaatactctggtaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 acatcgtgtatgtagtgatggggaatactccatacatgctagactaatactctggtaaat 410

                                                                       
Query: 365 gaaatacattcctaatgcttagaagaatattttggttggaaagaaatattgctctttttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaaatacattcctaatgcttagaagaatattttggttggaaagaaatattgctctttttg 350

                                      
Query: 425 tgttggaaatgttctaagctttgatat 451
           |||||| ||||||||||| ||||||||
Sbjct: 349 tgttggtaatgttctaagttttgatat 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)