Query= MSMg01no352_e24.b1 MSMg01no352_e24.b1 CHROMAT_FILE:
MSMg01no352_e24.b1 PHD_FILE: MSMg01no352_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:48 2005
(479 letters)
>mm_chr4_103283306_103284184
Length = 879
Score = 855 bits (442), Expect = 0.0
Identities = 469/482 (97%), Gaps = 7/482 (1%)
Strand = Plus / Plus
Query: 5 gaattcactggaattaa-------ctgaactccttattgctcaatcttccatccagtggc 57
|||||||||||||| || ||| |||||||||| |||||||||||||||||||||
Sbjct: 198 gaattcactggaatgaatgtgtggctggactccttattactcaatcttccatccagtggc 257
Query: 58 caggtcctttccaatatttccttctgttcagttttcagccattactctgtaacccacaca 117
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 258 caggtcctttccaatatttccttctgttcagttttcagccattactctgtaacacacaca 317
Query: 118 attcccaggaaccttagaggctacttagtccacagcctagaatatttagagcatgatccc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attcccaggaaccttagaggctacttagtccacagcctagaatatttagagcatgatccc 377
Query: 178 agagagggtaagtaaactggcttaaggttacactgtgccatagtgagagagctgaaatta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agagagggtaagtaaactggcttaaggttacactgtgccatagtgagagagctgaaatta 437
Query: 238 gaacccacctttagcctatactatcagaagccacacattgttaatttcacaaagaagtct 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaaccctcctttagcctatactatcagaagccacacattgttaatttcacaaagaagtct 497
Query: 298 ccaaggagagttgcaaaaatgtctcaggaaggtgatttaaagtgattttccttttctctt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccaaggagagttgcaaaaatgtctcaggaaggtgatttaaagtgattttccttttctctt 557
Query: 358 attgctttctgaaccccagaaacagattggactgaacaactgagcagtagagggcaaagc 417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 558 attgctttctgaaccccagaaacagattggattgaacaactgagcagtagagggcaaagc 617
Query: 418 aaacagaatgggtaccctgtgctccgcatgtctgttgtctacagcgaccgtcactgcctg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaacagaatgggtaccctgtgctccgcatgtctgttgtctacagcgaccgtcactgcctg 677
Query: 478 ca 479
||
Sbjct: 678 ca 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_e24.g1 MSMg01no352_e24.g1 CHROMAT_FILE:
MSMg01no352_e24.g1 PHD_FILE: MSMg01no352_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:48 2005
(424 letters)
>mm_chr4_103454794_103455617
Length = 824
Score = 774 bits (400), Expect = 0.0
Identities = 418/424 (98%)
Strand = Plus / Minus
Query: 1 catgtccagtgtgttattcatctgtgtcaccaagaaaatgatgggaacttcttcaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 742 catgtccagtgtgttattcatctgtgtcaccaagaaaatgatgggaacttcttcatgatg 683
Query: 61 gttgttgagacaattagatgtattaaaatgttctgaaacagtgcctagcaaatagtaact 120
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 682 gttgttgagataattagatgtattaaaatgttctgaaacagtgcctaacaaatagtaact 623
Query: 121 tcccccaaagcagtctaatgggtactatccttaatggtatcaccaccagaacacacatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcccccaaagcagtctaatgggtactatccttaatggtatcaccaccagaacacacatct 563
Query: 181 gacatctttacttcattgatattaatatgcatgaacataaataatccatctattcaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gacatctttacttcattgatattaatatgcatgaacataaataatccatctattcaaagt 503
Query: 241 atatcaagtagtcaccacattctatgttagtaataaatatctgaggtatcagagtcatag 300
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 atatcaagtagtcaccacgttctatgttagtaataagtatctgaggtatcagagtcatag 443
Query: 301 agacactgtcttcaactacaaggagcacaagatctaaaggaagagacaagtggggagaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agacactgtcttcaactacaaggagcacaagatctaaaggaagagacaagtggggagaaa 383
Query: 361 cccatagagcagtgtactagaaagatggccttgtttgctgatcattttcaacatacccag 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 382 cccatagagcagtgtactagaaagatggcctggtttgctgatcattttcaacatacccag 323
Query: 421 tagc 424
||||
Sbjct: 322 tagc 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
