BAC Information

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BAC

Clone NameMSMg01-352L22
Chromosome4 (Build37)
Map Location 61,819,247 - 61,819,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231
Downstream geneZfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L22.T7 (MSMg01no352_l22.b1)MSMg01-352L22.TJ (MSMg01no352_l22.g1)
ACCAG463796AG463797
length803802
length of high quality
(start - end)
408 (48 - 455)373 (77 - 449)
definitionCHROMAT_FILE: MSMg01no352_l22.b1 PHD_FILE: MSMg01no352_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:24 2005CHROMAT_FILE: MSMg01no352_l22.g1 PHD_FILE: MSMg01no352_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAATGTTTTCTTCGTTAAACAGTTGATGCAACCTGGCTACTGA
CAACAGTTAGGATTCTGAGGTCAGTGCTATCTGTTTAAAGGTTGAAGACT
TTTGGGAGGCTACAGCTATTAGCTTAGCCTTGGCAGATTTTTCTTGATAA
TCTTTTTTCTTTTTAATTTTCTTTTTTTTTATTATGTATTTTCCTCAATT
ACATTTCCAACGCTATCCCAAAAGTTCCCCATACCCTCCCCCCAATTCCC
CTACCCACCCATTCCCACTTTTCGGCCCTGGCGTTTCCCTGTATTGGGGC
ATATAAAGTTTGCCTGTCCAATGGGCCTCTCTTTCCAGTGATGGCTTACC
AGGCCATCTTTTGTTACATATGCAGCTAGAGTCAAGAGCTCCGGGGTATT
GGTTAGTTCATAATGTGGTTGCACCTACCGGGGTGCAGATATCTTTAGCT
CCCTGGTTACTTTCTCTAGATCCTCCCTTGTTGGCCCCGCGACCCTCCCA
TTATCTGATCGTGAGCCTCCCCTTCTCGGTTTGTAATTCCTGTCTTATTT
TTTCCCAATACTGTCTCTTTTTTTCCCCTTTCCCCTTCCCCCCTTTTTTC
TTTGTGCCCTCTCCATTTATTGTTTTCCCTCCTTTGTCCCTTCTTCCTCT
CTTTCTTTTTCTTCCTTTTCTTTCTTTCCCCCCCCCCTTTTTTTTCTTCT
TCCTTCTTCTCTTCTTACCCCTTCTGTCCCCCTTCTCTACCCTTACCCTT
CCC
NCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCTTCAGAGGAATGGATACTTAAAA
TGTGGTTCCTCTACTCCATGGAGGACCACTCCCCTTACTTAAAGAAAGAA
TTCTTGTAATTTCTACACCTAACGGAGGGACCTGGAGGGGTCCTTCTCTG
ATGGGCGCCACCTTTCTTATTGGTTTTTTCTTTTTGTTTCCCCGGCTTTT
TGGCATTTATTCCCCCTTTACCGATCCTTGACTACTTATCTTCTCTTTTA
TCCTTGTTCTCGCTTCCTCACATATTTCTGGTCCTTTTCTCCCCCCCCCC
CTTTTTTTTTTATCCCCCTTTCCTTTCCTTACCCCTATTCCTCGTCTTTT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l22.b1 MSMg01no352_l22.b1 CHROMAT_FILE:
MSMg01no352_l22.b1 PHD_FILE: MSMg01no352_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:24 2005
         (408 letters)



>mm_chr4_61819247_61820054
          Length = 808

 Score =  702 bits (363), Expect = 0.0
 Identities = 372/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaatgttttcttcgttaaacagttgatgcaacctggctactgacaacagttagg 64
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaattccaatgttttcaaagttaaacagttgatgcaacctggctactgacaacagttagg 316

                                                                       
Query: 65  attctgaggtcagtgctatctgtttaaaggttgaagacttttgggaggctacagctatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 attctgaggtcagtgctatctgtttaaaggttgaagacttttgggaggctacagctatta 256

                                                                       
Query: 125 gcttagccttggcagatttttcttgataatcttttttctttttaattttcttttttttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcttagccttggcagatttttcttgataatcttttttctttttaattttcttttttttta 196

                                                                       
Query: 185 ttatgtattttcctcaattacatttccaacgctatcccaaaagttccccataccctcccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttatgtattttcctcaattacatttccaacgctatcccaaaagttccccataccctcccc 136

                                                                       
Query: 245 ccaattcccctacccacccattcccacttttcggccctggcgtttccctgtattggggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ccaattcccctacccacccattcccacttttcggccctggcgtttccctgtattggggca 76

                                                                       
Query: 305 tataaagtttgcctgtccaatgggcctctctttccagtgatggcttaccaggccatcttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tataaagtttgcctgtccaatgggcctctctttccagtgatggcttaccaggccatcttt 16

                          
Query: 365 tgttacatatgcagc 379
           |||||||||||||||
Sbjct: 15  tgttacatatgcagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)