Query= MSMg01no353_d07.b1 MSMg01no353_d07.b1 CHROMAT_FILE:
MSMg01no353_d07.b1 PHD_FILE: MSMg01no353_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:00 2005
(565 letters)
>mm_chr4_135971756_135972720
Length = 965
Score = 955 bits (494), Expect = 0.0
Identities = 545/572 (95%), Gaps = 18/572 (3%)
Strand = Plus / Minus
Query: 10 gaattcattcagggttc--cagaggaagccagggagacgacgaggctttttctcacatgt 67
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct: 842 gaattcattcaggg--cagcagaggaagccagggagacgacgaggctttttctcacacat 785
Query: 68 tcccagctgcgagacagaattccttagtaaaaccaggccccaggactcagctcagggtca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tcccagctgcgagacagaattccttagtaaaaccaggccccaggactcagctcagggtca 725
Query: 128 tcttcacacggggagcggtttgaggccagcatgacatgagacccagattt---------- 177
|||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 724 tcttcacagggggagctgtttgaggccagcatgacatgagacccagatttaaaaaaaaaa 665
Query: 178 ----aaaaaaaaaaaaaaaaaaggaaaaaggaaaagaaaacaaccttcaccaaaccagtg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aaaaaaaaaaaaaaaaaaaaaaggaaaaaggaaaagaaaacaaccttcaccaaaccagtg 605
Query: 234 attaagtaataaacaaataaatgaacaactatggaagggcttcgtcaatgtcagccccac 293
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 604 attaagtaataaacaaataaatgaacaactatgaaagggcttcgtcaatgtcagccccac 545
Query: 294 ttacgcaaagggttcgctggaaccctggcactgcagcggggagagttttctacactgaat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttacgcaaagggttcgctggaaccctggcactgcagcggggagagttttctacactgaat 485
Query: 354 ctcctctaagcaatccaggagctccgttctttactgctcccattttaaaggtgaagaaac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 484 ctcctctaagcaatccaggagctccgttctttactgctcccattttaaaggtgaaaaaac 425
Query: 414 aactcaagctctcacagctaaaaaatgatggagctgggtgggggagatgactcagcgggg 473
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 424 aactcaagctctcacagctaagaaatgatggagctgggtggaggagatgactcagcgggg 365
Query: 474 aagagcactgactgctcttccgaaggtcctgagttcaaatcccatatgggatggataaaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aagagcactgactgctcttccgaaggtcctgagttcaaatcccatatgggatggataaaa 305
Query: 534 tgaggatcgaaatgagatctgaagccctcttc 565
||||| ||||||||||||||||||||||||||
Sbjct: 304 tgagggtcgaaatgagatctgaagccctcttc 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_d07.g1 MSMg01no353_d07.g1 CHROMAT_FILE:
MSMg01no353_d07.g1 PHD_FILE: MSMg01no353_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:00 2005
(437 letters)
>mm_chr4_135803053_135803894
Length = 842
Score = 779 bits (403), Expect = 0.0
Identities = 431/443 (97%), Gaps = 7/443 (1%)
Strand = Plus / Plus
Query: 1 ttggaattaccgctcgcgagctgagagtgggaggcagagttattccctccaccccaaatt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaattaccgctcgcgagccgagagtgggaggcagagttattccctccaccccaaatt 260
Query: 61 actcttccaagccgaccccctgtgtaccggaatcacccaaaactt-g-----cggagcgt 114
||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 261 actcttccaagcccaccccctgtgtaccggaatcacccaaaacttagtctttcggagcgt 320
Query: 115 ggtcccgatacccctttgagaggttgttagaaaaaataaagactggccggcaaagggctc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcccgatacccctttgagaggttgttagaaaaaataaagactggccggcaaagggctc 380
Query: 175 tgagtatacctcgcgagtacgtgtacagcacaggccttgggcgcaccaaggagcctacct 234
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtatacctcgcgagtacgtgtacggcacaggccttgggcgcaccaaggagcctacct 440
Query: 235 aagttagggcagattctgacgtcaaaatctgcaccaagatgcgatgaattcaccaacttt 294
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagttagggcagag-ctgacgtcaaaatctgcaccaagatgcgatgaattcaccaacttt 499
Query: 295 cccagcttgggcatagctccctctgggagctcagtgatgctgagacccggcagctctgta 354
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 cccagcttgggcatagctccctctgggagcgcagtgatgctgagacccggcagctctgta 559
Query: 355 cttcccactgctatgctgacactcatcacccccgaaccctcatgctcgaatctccctgga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcccactgctatgctgacactcatcacccccgaaccctcatgctcgaatctccctgga 619
Query: 415 gcctggggcacccctaggagagt 437
|||||||||||||||||||||||
Sbjct: 620 gcctggggcacccctaggagagt 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 842
Length adjustment: 9
Effective length of query: 428
Effective length of database: 833
Effective search space: 356524
Effective search space used: 356524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
