BAC Information

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BAC

Clone NameMSMg01-353D08
Chromosome4 (Build37)
Map Location 33,218,384 - 33,218,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2
Downstream geneGabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1, Spaca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353D08.T7 (MSMg01no353_d08.b1)MSMg01-353D08.TJ (MSMg01no353_d08.g1)
ACCAG464142AG464143
length761768
length of high quality
(start - end)		538 (51 - 588)404 (82 - 485)
definitionCHROMAT_FILE: MSMg01no353_d08.b1 PHD_FILE: MSMg01no353_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:00 2005CHROMAT_FILE: MSMg01no353_d08.g1 PHD_FILE: MSMg01no353_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGA
TCCGCGGAATTCTACAAATCCTAAGGCAGATAGGAAAGAACTATCTTCTG
CAGGCAGCCAGGAAGAGGGTCTCTTTTCTTCTCTAGGCAGAACTTGAGCA
CTAGAAGACCTCAAAGCCTGCCTACACAGTGACACACTTTCTCTAAGAAG
GTTACACTTCCTCCAGTACGTCCACACCTCCTCCTAATAGTGCCACTTTC
CATAGGTCAAGCACATTCAAGCCTCCACAAGCTTTCTTTGAGTCATTTAT
GCTCTTGTGATTCCTCGTCCATACTCCTATATGTGCCCCCAATAAAACTA
ACTTGTTCACCAAGTTGGATTTTGTTACTAACCTTGTATTGATCTGCCAT
TAGTTCCCTATGTAGAGTGAGTAGATGTCTCCTCAGGTATAATGCCACAC
GATTCCTTACAAAACTCATTTTCTTCACTCGGGTTGGCATATGTCCACCA
GTTATCTACTGCTATGTAACAAGCACCCCCAAATATCCGTGGTTTTAAAT
AGTAACCATATTATTTGCTCATGGTTCCTATGATTGGTTGTATAAGGTTC
AACTTCAATAGCAAGTCTGTTTGCTGTGTGGTATGAGCTGTAAACACCCA
CTGATTTACAATTAAGTCTGAAAATCCAAGATTGTCACTCACAACCCCGG
TCCCCCCCCCTGGATGTTACGGGGGCTTTGAAGAAAAAGACCCCCCTGTC
CCCTTTTATTT

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCACTCCCCTGCTGAA
AGGGCAACCTGAAACCCAGGCAACCTCGGCTTAACTTGAACTCTCTCTAT
ATAGCCAAGGTTGTTTTTGAATTTCTGATATTCATGTCTCTAAAGGGATA
GACTCAAAGAGATAGGGCTTAGGCTAGGTGTTGTTGTGCATAGCTATAAC
TTCAGTATTCTGGGAGCCAGGAAGATTATACATTTGAGGCCAGCCTGGGC
TACATGGCAAGACTACATTGATGAGCCAAGAAAGTAGCCTAGGCTATCTA
AATGAAAAAGATGCGTAACTACAAGAGGAAGAGAAAGATGAGAAGGCAGA
AGAGGACAAAGTGGATCTACTGTAAGATAATTAGATCTTGGAGAGAAGGT
GCCATCTTTGATATGATTAATATCACTCTGAGAAGAACCTGTTAGNTTGT
AAAAGCGTATAGTCTTATTAAAAGACCAAAGGCTATACCTGTTCCACCTC
TCTACCCAGTCAGATCCTGTTCATCTTTTTCCTGAATTTTCCACTGAATC
TGCCCGAACTTCCTCCTCTACCCTTTCCCTTACTTGTAATATCTTTGACC
CTGTGCTATGCTTTTTTCCTCCTTTTGCGGTTTTCACACTTTTTTTCCCT
TTTCCCGTATCTTTCCTGTCCATTCCCCTTTCTTTCGGTTTTTCTATACC
TAATTTCCCCTTTCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_d08.g1 MSMg01no353_d08.g1 CHROMAT_FILE:
MSMg01no353_d08.g1 PHD_FILE: MSMg01no353_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:00 2005
         (404 letters)



>mm_chr4_33217952_33218755
          Length = 804

 Score =  688 bits (356), Expect = 0.0
 Identities = 368/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 33  acccaggcaacctcggcttaacttgaactctctctatatagccaaggttgtttttgaatt 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acccaggcaacctcggcttaacttgaactctctctatatagccaaggttgtttttgaatt 745

                                                                       
Query: 93  tctgatattcatgtctctaaagggatagactcaaagagatagggcttaggctaggtgttg 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctgatattcatgtctctaaagggatagactcaaagagatagggcttaggctaggtgttg 685

                                                                       
Query: 153 ttgtgcatagctataacttcagtattctgggagccaggaagattatacatttgaggccag 212
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 ttgtgcatagctataacttcagtattctgggaggcaggaagattatacatttgaggccag 625

                                                                       
Query: 213 cctgggctacatggcaagactacattgatgagccaagaaagtagcctaggctatctaaat 272
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 cctgggctacatggcaagactacattgatgagccaagaaagtagcctaggctgtctaaat 565

                                                                       
Query: 273 gaaaaagatgcgtaactacaagaggaagagaaagatgagaaggcagaagaggacaaagtg 332
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 gaaaaagatgcataactacaagaggaagagaaagatgagaaggtagaagaggacaaagtg 505

                                                                       
Query: 333 gatctactgtaagataattagatcttggagagaaggtgccatctttgatatgattaatat 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatctactgtaagataattagatcttggagagaaggtgccatctttgatatgattaatat 445

                       
Query: 393 cactctgagaag 404
           ||||||||||||
Sbjct: 444 cactctgagaag 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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