BAC Information

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BAC

Clone NameMSMg01-353H19
Chromosome4 (Build37)
Map Location 50,805,901 - 50,806,171
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353H19.T7 (MSMg01no353_h19.b1)MSMg01-353H19.TJ (MSMg01no353_h19.g1)
ACCAG464352AG464353
length718827
length of high quality
(start - end)		276 (57 - 332)---
definitionCHROMAT_FILE: MSMg01no353_h19.b1 PHD_FILE: MSMg01no353_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:22 2005CHROMAT_FILE: MSMg01no353_h19.g1 PHD_FILE: MSMg01no353_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCTTNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTAGGATTTTCTACATATACAGGTTTCAATGAT
TCATGGAGAGGAAACATGAATAAAATTTTCATAACAATGTTTTCTACACA
GAAGTTGTTCTTATTAATAACAGTATAAACCACTGCCATTAAATCATTTT
CTGGATGTGTTGTAACAATATTCAAAAGTCTGCTGTGAGATGATATACTT
TTTAGATTCTATAGTTGAAAAATACCTGACAATTTGAATGTGAGTTTTAA
ATATAGAAATGGTAAAAATACATCCTGTCACATGAACAAAGACTTTCATT
CAAGAAATGAAAATAAATTCTCTTAATTTCANGCTGTTTTTTAAATCTTT
TCACTTATACCCTTTAATGAGAAAACCTAAAATCCAGGGTTTTGTAAAAG
GGTTGGGGGAATCCTTTCCCTAAAATTAAGGGGAATGGGGGAAAATAAAA
CCGGGGTAAAAATTTCCCTTTAATATAAATTTTCCAAAATTAAAGGCTTT
TTCCCCCTTTTTCCCCCACTTTTTTTTTTTTTATATAAAACCGTTTTTTC
TTTTTGGAAACAATTTTTACCCCCCCACACTTATAAAAAAAAATTTTTTT
TTTTTATAGGTGTTTCTCACAAAAAAAAAAAATATTTTTTCTCTTAAAAA
AAAATTTTTTTTTTTTTG

CTTCCCCATCTCCCCTTCCTTCCCTCCAANCCCNNNNNNNNCCTTTTCCC
TNTCCNNCCCCAATTGACTAANTGGGGNTAGGGNCCTTGGGNCGGGNCCG
NCCCTTGGGTTCCTCTACGNAACATTNTTAGGGTTGGNACACCTTAATTA
GNAAAGTGTTATTCCCGNCGGGGAAAATTTNNCAACAGNAAAAGNTTTGG
TTTTCCCAGAATTNAGNANANNACAGNNCAAAGNAAAGAATTGGCTTTTT
CCCNNCAGAAATAGGNTGGCCTTAAAGGGGAAGGGGGGGGAAGGGGAATT
GGAAAGGGNAAGAAAAAAAAACAAAGNAATTAANTGTGAACCCCAAAAAG
GGAATTACCAAAAAAATTTTTCCCAGGAAATTNAAAATTTCCCAGGAAAA
AGGAAACCCCAAAGGGGTTTTTTTTCCCAAGGTAAACCCCCCTTTGGGTT
TANCCCCCCCCCGGAAAAAAAAAGTGGGGGTTTTTTCTCCCCACCAAAAA
GGCTCCCCCCCACAAAAAAAAAAAAAACCCGCGGGGGGGGGGGGGGGGCC
TTTAAAATTTTTATAAATACCCCCCCTTTGGGGGCAAAAAAAGAATGTTT
TTTGATTTTTGAAAAAAAAAAAATTTGGGAGACAAATTTTTTTTTTTTAA
TCACCCCCCCCCCCCCCTTATAAACCCCCCCTCTTTTTTTTTAAAAAAGA
GGGGAAGAAAAATTCCCCTTGGGGGGGGGGTGTTGTTTTATATAATTAAT
ACCCCACCCCCCTCTTATAAACCTCTTCTCCCACCACCGTTGTGAGGAAA
GTGTGGTTTTTATTTTAATATAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_h19.b1 MSMg01no353_h19.b1 CHROMAT_FILE:
MSMg01no353_h19.b1 PHD_FILE: MSMg01no353_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:22 2005
         (276 letters)



>mm_chr4_50805697_50806371
          Length = 675

 Score =  511 bits (264), Expect = e-149
 Identities = 270/272 (99%), Gaps = 1/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaggattttctacatatacaggtttcaatgattcatggagaggaaacatgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaggattttctacatatacaggtttcaatgattcatggagaggaaacatgaa 264

                                                                       
Query: 65  taaaattttcataacaatgttttctacacagaagttgttcttattaataacagtataaac 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagaattttcataacaatgttttctacacagaagttgttcttattaataacagtataaac 324

                                                                       
Query: 125 cactgccattaaatcattttctggatgtgttgtaacaatattcaaaagtctgctgtgaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactgccattaaatcattttctggatgtgttgtaacaatattcaaaagtctgctgtgaga 384

                                                                       
Query: 185 tgatatactttttagattctatagttgaaaaatacctgacaatttgaatgtgagttttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatatactttttagattctatagttgaaaaatacctgacaatttgaatgtgagttttaa 444

                                           
Query: 245 atatagaaatggtaaaaatacatcctgtcaca 276
           ||||| ||||||||||||||||||||||||||
Sbjct: 445 atata-aaatggtaaaaatacatcctgtcaca 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 675
Length adjustment: 9
Effective length of query: 267
Effective length of database: 666
Effective search space:   177822
Effective search space used:   177822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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