Query= MSMg01no354_l04.b1 MSMg01no354_l04.b1 CHROMAT_FILE:
MSMg01no354_l04.b1 PHD_FILE: MSMg01no354_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:55 2005
(622 letters)
>mm_chr4_59630220_59631241
Length = 1022
Score = 1181 bits (611), Expect = 0.0
Identities = 617/619 (99%)
Strand = Plus / Plus
Query: 4 ggaattcttcctagaatgcatgttcttcaagtagcatattccttaggtcactaatgcttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcctagaatgcatgttcttcaagtagcatattccttaggtcactaatgcttt 263
Query: 64 cactgtctttatttttcgttttagggaaattaaagccaaccatggcatttatgtcaggaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactgtctttatttttcgttttagggaaattaaagccaaccatggcatttatgtcaggaa 323
Query: 124 agttgaagattaaaggaaacatagccctagcaatcaaattggagaagctaatgacccaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agttgaagattaaaggaaacatagccctagcaatcaaattggagaagctaatgacccaga 383
Query: 184 tgaattctagactatgaaggacaagaagtaacaatgttgactctcctcagaagtaaaaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaattctagactatgaaggacaagaagtaacaatgttgactctcctcagaagtaaaaag 443
Query: 244 ctcagcagttagaaatctgttgtctcccccactgtcatgtaaggacatataagtttgttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcagcagttagaaatctgttgtctcccccactgtcatgtaaggacatataagtttgttc 503
Query: 304 tagaaagaagtagaatttctgtatctataagatttgaaattgtaactaaaacaactaacc 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 tagaaagaagtagaatttctgtatctataagatttgaaactgtaactaaaacaactaacc 563
Query: 364 aatcacatacaactttaattaagtgacatcctaatatattgtggtttttccaagttttcc 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatcacatacaagtttaattaagtgacatcctaatatattgtggtttttccaagttttcc 623
Query: 424 tctctatgcctttatttcattcattgctttcttgcagaaaagtatgtatcatgaacaacc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctctatgcctttatttcattcattgctttcttgcagaaaagtatgtatcatgaacaacc 683
Query: 484 aattggtatcaagcaataaaattagctgtttacaaaacttcttatgtaaaatgaagctac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aattggtatcaagcaataaaattagctgtttacaaaacttcttatgtaaaatgaagctac 743
Query: 544 tttatctccacaaagacagttgcatgagggttgggtgaagaactgcagtatcatttcttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttatctccacaaagacagttgcatgagggttgggtgaagaactgcagtatcatttcttt 803
Query: 604 ctgtaaccctgactggctt 622
|||||||||||||||||||
Sbjct: 804 ctgtaaccctgactggctt 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_l04.g1 MSMg01no354_l04.g1 CHROMAT_FILE:
MSMg01no354_l04.g1 PHD_FILE: MSMg01no354_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:55 2005
(542 letters)
>mm_chr4_59781911_59782856
Length = 946
Score = 797 bits (412), Expect = 0.0
Identities = 435/444 (97%), Gaps = 5/444 (1%)
Strand = Plus / Minus
Query: 104 gcgctggactcggttgaagccttgagtgaatccattgctggggtcacgggtgggtgatgc 163
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gcgctggactcggatgaagccttgagtgaatccattgctggggtcacgggtgggtgatgc 887
Query: 164 atgcagtggtggtgcacactataatcccagcactcgggaggcagaggcaggcagatttct 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 886 atgcagtggtggtgcacactataatcccagcactcgggaggcagaggcaggcggatttct 827
Query: 224 gagtttgaggccagcctggtctacagagtgaggtccagaacagccagggctacagagaaa 283
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 826 gagtttgaggccagcctggtctacagagtgaggtccagagcagccagggctacagagaaa 767
Query: 284 ccctgtctc-aaaaacaaaaaataggaacagtacacaactgactattgtacttatttagg 342
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ccctgtctcgaaaaacaaaaaataggaacagtacacaactgactattgtacttatttagg 707
Query: 343 ccaatgttgtttaaagtacaagtctcagcctgtttgagctgaaaaggcagcttgatggtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ccaatgttgtttaaagtacaagtctcagcctgtttgagctgaaaaggcagcttgatggtt 647
Query: 403 taatgcattgtatcagcattaaataaacaaa-aaa---aaaaagaaaacagtttactgca 458
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 646 taatgcattgtatcagcattaaataaacaaacaaacaaaaaaagaaaacagtttactgca 587
Query: 459 tatgttaataggcacgttagtttcaaagtgttctgtaagtgtatgtctgtgtttagttta 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tatgttaataggcacgttagtttcaaagtgttctgtaagtgtatgtctgtgtttagttta 527
Query: 519 tattctactctctacatcttcaag 542
||||||||||| ||||||||||||
Sbjct: 526 tattctactctatacatcttcaag 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 946
Length adjustment: 10
Effective length of query: 532
Effective length of database: 936
Effective search space: 497952
Effective search space used: 497952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
