Query= MSMg01no354_p10.b1 MSMg01no354_p10.b1 CHROMAT_FILE:
MSMg01no354_p10.b1 PHD_FILE: MSMg01no354_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:17 2005
(143 letters)
>mm_chr4_120062052_120062594
Length = 543
Score = 253 bits (131), Expect = 3e-72
Identities = 140/143 (97%)
Strand = Plus / Minus
Query: 1 tgttgcttttgtgctacgcttcccttcccgctccggaatattcctgccagctcctctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgttgcttttgtgctacgcttcccttcccgctccggaatattcctgccagctcctctgac 284
Query: 61 ggaagctgtccctccccatctctggtagaacaaacacctccatttgcttttcttgcactt 120
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 283 ggaagctgtccctccccatctctgggagaacaaacacctccatttgctttccttgcactt 224
Query: 121 tcgagtgttatagcattgatcat 143
|||||||||| ||||||||||||
Sbjct: 223 tcgagtgttacagcattgatcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space: 72225
Effective search space used: 72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no354_p10.g1 MSMg01no354_p10.g1 CHROMAT_FILE:
MSMg01no354_p10.g1 PHD_FILE: MSMg01no354_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:17 2005
(571 letters)
>mm_chr4_119896693_119897663
Length = 971
Score = 1007 bits (521), Expect = 0.0
Identities = 552/571 (96%), Gaps = 15/571 (2%)
Strand = Plus / Plus
Query: 1 attacccctcaactaacagccccctgaggctagaataccaccaccatcactcaggaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacccctcaactaacagccccctgaggctagaataccaccaccatcactcaggaccac 260
Query: 61 tgctgagtcctcattatcagtctcgctagctgggatatcccctgcctctaccagaaacac 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgagtcctcattatcagtctcactagctgggatatcccctgcctctaccagaaacat 320
Query: 121 cacaaacacacaaatacatatatgcagatacacacatacacacacacacacacacacaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaacacacaaatacatatatgcagatacacacatacacacacacacac--------- 371
Query: 181 caccagttatacacatatatatgtacacacaaatgcacgtgccactaaatacatgaaata 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ---cagtt---cacatatatatgtacacacaaatgcacgtgccactaaatacatgaaata 425
Query: 241 acacacatacacataccatatgctgcacacatagacacacatatgagtacacacataaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acacacatacacataccatatgctgcacacatagacacacatatgagtacacacataaaa 485
Query: 301 cacatgccttaccaggggttggtcgaggagaactttccagaatcccatgctggccagact 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cacatgccttaccaagggttggtcgaggagaactttccagaatcccatgctggccagact 545
Query: 361 gaaccacttcttgccctttataagctggcctcaaagctatagagccttggcctcctcact 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaaccacttcttgccctttgtaagctggcctcaaagctatagagccttggcctcctcact 605
Query: 421 tcactgagaccaaaggaacagaaccgtttaaaatggtagcatcaggcctgggtctaaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcactgagaccaaaggaacagaaccgtttaaaatggtagcatcaggcctgggtctaaatg 665
Query: 481 accctcatgggtcatttagttactgtgtagctgtggctgagttacatacctctctgggcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 accctcatgggtcatttagttactgtgtagctgtggctgagttacatacctctctgggcg 725
Query: 541 cttcctctgtaagtggctagcggccctcagg 571
|||||||||||||||||||||||||||||||
Sbjct: 726 cttcctctgtaagtggctagcggccctcagg 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
