BAC Information

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BAC

Clone NameMSMg01-355I13
Chromosome4 (Build37)
Map Location 27,376,823 - 27,376,949
singlet/doubletsinglet
Overlap genenone
Upstream geneGng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355I13.T7 (MSMg01no355_i13.b1)MSMg01-355I13.TJ (MSMg01no355_i13.g1)
ACCAG465899AG465900
length858772
length of high quality
(start - end)
127 (68 - 194)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no355_i13.b1 PHD_FILE: MSMg01no355_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:00 2005CHROMAT_FILE: MSMg01no355_i13.g1 PHD_FILE: MSMg01no355_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCATTTCAGTTAGAGGGGAGTTTAGTTCAATGAGTTTGTAGC
CAGTACAATGAGCACAGTTGAGTGGTGTTTGGTTATGTAAGTTCATACAG
ATCAGTGTGAGTCCAGAGAGTCAGTTAAAGCCAAAGTTTCAAAGGCCAAG
CTTTGACACAGCAGGTAACTGTGCGGACCAGTTGTGATACTGGAGCAAAA
AGGGTGTTTCCCGGATCCGNCCGGATTGATTGGGGCCCCCTGGTTGACCT
GGGAGAANTTATATTTGGAATAGTTTAAAGGGGGGGATCCGAAGTTGGTG
GTTTTTCAGGAAGAAAAAAAATACGGGGTGTATATATCNNNNACATTATT
TTTGAAAGTGCGCNCNCNCACAACAAAATTTTCCCCCTCTTTTCTTTNNC
TCAAATTTTTACTTTAAAATATTCTCGGGTTTTTAAAAAAAAAATTTTTC
TTTTTTTGTGCGGTTTATTTTTTTTTTTTGTCCCCCTTAAAAAAATTCGA
GTCCCTTTTTTTTTTTCTTTGGCGTTGGCCGGGCGAAAAAATTCCTTTGT
GAGGGCCCTTTTTCTTGGGGGTATCTATAACATTTTCTTTTCTTCTTTAC
CACATAATGACCCCTCTCCCTTTCTCTCCTCCTCTTTTCTATTCTCTCGT
CTCTCAAGTTTCGTTACTTTTCTCCTTCCTTTTTTTTCTGTCTCTTTTTC
TTCCATTATCCACCCCTTGTTTCCTCCCTATAAAGTTTTTTCCTCTTTTG
CCCCCTCCCTCTCCTCCTCTCCTTTCTTCTCTAACCTTTNTTTCCCCCTC
TCTTCTCN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGA
ATGGGTGTTGAATCTTTTCAAATGCTTTTTCTGCATCTAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGA
TTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATATGTTCTTGGATTCGGTTAGCAAGAATT
TTATTGAGGATTTTTGTATCGATATTCATAAGAGAAATTGGTCTGAAGTT
CTCTATCTTTGTTGAATCTTTCTGTGATTTAGGTATCAGAGTAATAGTGG
CTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAAT
AGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTC
TGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAA
TAACTGCTTCTATTTCTTTTAGGGGATATGGGACTGTTTAAATGGCCAAT
TTGATCCTGATCCCATCTTTTGCACCTGGTACCCGTCCCTAACTTTGCCC
CCTTCCCCCCAGTTTTTCTCCACTTTGCTTTTTCATATACTTTTTGTCTA
ACTATCTGGATGTCGGTTTTCGAATTCCTTCCCCATTTCTATGTTTTTGA
TCTCTTTTTCATATCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_i13.b1 MSMg01no355_i13.b1 CHROMAT_FILE:
MSMg01no355_i13.b1 PHD_FILE: MSMg01no355_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:00 2005
         (127 letters)



>mm_chr4_27376623_27377149
          Length = 527

 Score =  209 bits (108), Expect = 5e-59
 Identities = 123/128 (96%), Gaps = 2/128 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaggggagtttagttcaatgagtttgtagccagtacaatgagcacagttg-agtggt 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 327 ttagaggggagtttagttcaatgagtttgtagccagtacaatgagcacag-tgtagtggt 269

                                                                       
Query: 60  gtttggttatgtaagttcatacagatcagtgtgagtccagagagtcagttaaagccaaag 119
           ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gttcggttatgtaagttcatgcagatcagtgtgagtccagagagtcagttaaagccaaag 209

                   
Query: 120 tttcaaag 127
           | ||||||
Sbjct: 208 tgtcaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)