NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCTGTACGAAGAAAACAGACCTAGACAATTACTTAACAA
GAAAATTGCTATAAAGAAGGACTAAGCAAGAACATGTGGAGGCTGCATAG
AATTAGGCAGGTTTAATAGTAAAATCAGCTGTATGTGTTTTAAACCCACA
ATTTCCTTGTCTTCAAAGCATCTCCATGATTGCTCCTTTTAGACAGCTCA
GACAATGGAAGGAAAAAAAATGTAAAAATGTAGACTTTTGTGGATTCTTT
CAAAAGGGAAAAGATACTTGGTAGGAGAGTATGAAGTTTCTCTTTTATTT
TAGAAAATACTTATTTTTCTAAACACCATCGAATGTCATGTTGGATTAGA
TTTGAGAATTTGTTATAAGATGTGTTGGGTTTAGAAATTATTGCTTATAA
AATAGAATATAGTCACAGCTTTTTCTCTAGATAAAACTGATGGGAAAATA
CTCAAGTCCAATCAACACTTTTCTTAGAATAACAAATGTGGAGAATATTT
AATTTTACAGATGGCCATGAGCACAAACCAGTATAGTCTCTCTCTCTATA
TTCTTCTAGTTCTGTGACTTGAATCCATAGAATACATGGTTTGGAGCCAA
TTTCCTTCTTTCTTTTTTTTAGTTCAAAAATACATATAGACCAACCTATA
GATTTTTGCTAAAGAAAGAATACCTATTTG

CTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGGAATCGCTTACAGTC
TACAGTCCAACTAACCCCACAGTGGGCAGCTGTGAATGGGAATCCTAAGA
ATCTAGTAGCTGCTCAGCCCAGGAGGCTGGGTGTCTCAGCTGGCCGTCTG
TATAAGCTGGATTCCTGAAGAAGTAGGTTCTAACAGATGTGCTGGCAAAG
TATGTGCAAGCAGGCAAAGAACAAACCCTTCTTTTTTCCATTGTCCTTAT
GTAGGTCTCCAGCAAAAGGTATGGTCCAGATCAAAGGAGAGGCTCAGATC
TGGCTTAAAGGTCTGCGTTGATCTGGATTAAGAGCATAGGTCATCCCACC
TTAAGACCTGGATCAAAAGATTGTGCCTTCCCGCCTCAAGATCCAGGTCA
CAGGTGTGCTCTCCATTTCTGGACCGTAATTCATTCCAGATATAGTCAAG
TTGACCACCAAGTATTGCTGCCAAGCTATCACAAGGGCCAAACTTATTTT
TCTAAGAAACTGACTCTAGCAATAACTAGCCCATTCCTACCGTTAAAAAA
AAATGTGACATGGTAGATTACTAGGAGCATGTACCTAGTTGAGATACTCT
GGACTCTACAAAAACAATTCTTTTGATAATTAATATTTTCCATAGGTTTT
CTGAAGAGAACTTGTTTCTATTCTATTGGCCAAAAA

Query= MSMg01no355_i19.b1 MSMg01no355_i19.b1 CHROMAT_FILE:
MSMg01no355_i19.b1 PHD_FILE: MSMg01no355_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:02 2005
         (557 letters)



>mm_chr4_93269998_93270953
          Length = 956

 Score = 1031 bits (533), Expect = 0.0
 Identities = 548/553 (99%), Gaps = 1/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctgtacgaagaaaacagacctagacaattacttaacaagaaaattgctataa 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattcatctggaggaagaaaacagacctagacaattacttaacaagaaaattgctataa 697

                                                                       
Query: 65  agaaggactaagcaagaacatgtggaggctgcatagaattaggcaggtttaatagtaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agaaggactaagcaagaacatgtggaggctgcatagaattaggcaggtttaatagtaaaa 637

                                                                       
Query: 125 tcagctgtatgtgttttaaacccacaatttccttgtcttcaaagcatctccatgattgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tcagctgtatgtgttttaaacccacaatttccttgtcttcaaagcatctccatgattgct 577

                                                                       
Query: 185 ccttttagacagctcagacaatggaaggaaaaaaaatgtaaaaatgtagacttttgtgga 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 576 ccttttagacagctcagacaatggaagg-aaaaaaatgtaaaaatgtagacttttgtgga 518

                                                                       
Query: 245 ttctttcaaaagggaaaagatacttggtaggagagtatgaagtttctcttttattttaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttctttcaaaagggaaaagatacttggtaggagagtatgaagtttctcttttattttaga 458

                                                                       
Query: 305 aaatacttatttttctaaacaccatcgaatgtcatgttggattagatttgagaatttgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaatacttatttttctaaacaccatcgaatgtcatgttggattagatttgagaatttgtt 398

                                                                       
Query: 365 ataagatgtgttgggtttagaaattattgcttataaaatagaatatagtcacagcttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ataagatgtgttgggtttagaaattattgcttataaaatagaatatagtcacagcttttt 338

                                                                       
Query: 425 ctctagataaaactgatgggaaaatactcaagtccaatcaacacttttcttagaataaca 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 337 ctctagataaaactgatgggaaaatactcaagtccaatcaacacttttctcagaataaca 278

                                                                       
Query: 485 aatgtggagaatatttaattttacagatggccatgagcacaaaccagtatagtctctctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatgtggagaatatttaattttacagatggccatgagcacaaaccagtatagtctctctc 218

                        
Query: 545 tctatattcttct 557
           | |||||||||||
Sbjct: 217 tatatattcttct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space:   517462
Effective search space used:   517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)