NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAAATATATGGCTGATTTCTGCTCGTGGCCTGAGAA
CTTGAATGAAGATGACTCCAACATCAATAAAGGACTAATCTGCCTTGCAG
AGGAAATTTCCAGACTGGTTAGTATTAAGGCTCTGACAGAATTTCTGTCT
TCTGCTCTCAGCCAGGTCCACAGTACCAGAAAACAACAAGGCAGGCAAAC
CGATATGAAGGTGCACTGTTTAGACACGGTGGCTGAGAAAGCAGTTGTAA
TTTGTAAAGAATGTAATGCCATTAAAAAAAACTCATGGTATTCCTTAGAG
TGAGAAGAAAAGCACCCTAAGGGTAAGACCCCATCCACCAAAGGCACCAA
TTAGTGAAAATTCAAGTTCATTTGAAATGAAGGAGCCTAAATTTTGAATA
CAGCTAAAGAAATTTCATGCTTAAAAATATCAACCTAAAAGAATATTTTC
AGGTAAGCACAAATGTAGATACCAGTGTAACTGTGGTCTTGAAGGTGGGA
CAGACAACAATTCAAGTTGGGAGCAGAACTAGACACACTGTCTATGTGGT
ACTGGTTTTCTATGCATTGAAGATACAGGATGGAGATGGGACATGAAGTC
TTGTGCCAGGATCCAGAGAGATGCTGAAACCCAGCAATGTGTAGTAGAAT
CAGAATACCTGTAGGAAAGCCCTAGGGGATCTTTCAGCAGATATG

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCAATACCAGGAGCTTGAATT
GGGGACCATCTTCTTGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAT
TTTTCTTTATCCCTAGAGGTTCAGAACCAAGATCATACAGCAACATTATC
TCTCATGGGCAATCTGAAAAATGAGTTTCTAGAGATATATTCTTGATTCT
GATTCACCTTCTCTTATAATGAAATAATTCTCATGGACCACAGTGTACTG
TTTTGTTTGTAAGAAACCCTCCTACCTCATTAAGCTCATTCCCACCAGTA
CTCTAAGTTATTGGTGCATGGCCCACAAAAATTCAAGGATATATGCTCTT
CCTAAGTGAGTGCCAACCTCATCTTTTCAGAAGGTAAGAAATGCCGTAAG
AAATACAGAAGATCATGGAAATAGTTCTCAAATGTTTTGTTATAGAAATC
AGTTTAATAACCTGGGTTTATCTCTAACAAAAAATTCACACAAAAAAAGG
TTATTTCCCAATAAGGGGAATAAAATTGGGAGGAACTTTTTATTGTCCCC
CCCCCCAAAAAAAAATAAATAATTTTCTTTAAAAAAAAAAACCTTTTTGA
ATTGGGTTAAATTGGGGGGTGGGAAAAAGCCCGGGCCCAAAAATTAATAA
AAAAAAAAAAC

Query= MSMg01no355_k23.g1 MSMg01no355_k23.g1 CHROMAT_FILE:
MSMg01no355_k23.g1 PHD_FILE: MSMg01no355_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:12 2005
         (402 letters)



>mm_chr4_13283146_13283947
          Length = 802

 Score =  615 bits (318), Expect = e-180
 Identities = 365/402 (90%), Gaps = 34/402 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcaataccaggagcttgaattggggaccatcttcttgggttctctctctctctctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cagtcaataccaggagcttgaattggggaccatcttcttgggttctctctctctctctct 629

                                                                       
Query: 61  ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct 120
           |||| |||||||||||||||||                                 | |||
Sbjct: 628 ctctatctctctctctctctct---------------------------------t-tct 603

                                                                       
Query: 121 gcatttttctttatccctagaggttcagaaccaagatcatacagcaacattatctctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gcatttttctttatccctagaggttcagaaccaagatcatacagcaacattatctctcat 543

                                                                       
Query: 181 gggcaatctgaaaaatgagtttctagagatatattcttgattctgattcaccttctctta 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gggcaatctgaaaaataagtttctagagatatattcttgattctgattcaccttctctta 483

                                                                       
Query: 241 taatgaaataattctcatggaccacagtgtactgttttgtttgtaagaaaccctcctacc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 482 taatgaaataattctcatggaccacagtgtactgttttgtttgtaagaaacccttctacc 423

                                                                       
Query: 301 tcattaagctcattcccaccagtactctaagttattggtgcatggcccacaaaaattcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcattaagctcattcccaccagtactctaagttattggtgcatggcccacaaaaattcaa 363

                                                     
Query: 361 ggatatatgctcttcctaagtgagtgccaacctcatcttttc 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggatatatgctcttcctaagtgagtgccaacctcatcttttc 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)