BAC Information

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BAC

Clone NameMSMg01-355L12
Chromosome4 (Build37)
Map Location 98,787,796 - 98,788,250
singlet/doubletsinglet
Overlap geneLOC665193
Upstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3
Downstream geneAtg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L12.T7 (MSMg01no355_l12.b1)MSMg01-355L12.TJ (MSMg01no355_l12.g1)
ACCAG466039AG466040
length754768
length of high quality
(start - end)		459 (45 - 503)458 (77 - 534)
definitionCHROMAT_FILE: MSMg01no355_l12.b1 PHD_FILE: MSMg01no355_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:15 2005CHROMAT_FILE: MSMg01no355_l12.g1 PHD_FILE: MSMg01no355_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTACTGGCATAACTGTTCTTGGAGAAAAGGGCCTGGGCTCTGGGT
CTCACGTTCACGGGAAGAGCTTGCCATGTGTGACCAAGGGCAAGTCACAG
CTTCTCTGAGACAATTTTTTTCTCTCTAAAATGGAGCTAAATCTACTTCA
AAGAGCTGTTGTGGAGATTAAGTAAGATCATGCGTGTAAGCTTGGCCATG
CACCACAAATCAGCGGTTATCACACCACCTTTGTGTGAGAGTTCTTTCTA
CAAAGAAGAGCCATTGTTTCTCCAGCTAGACCCCACTCACGAGGTCGGGG
CGTGCAAGAAAGGTGCTTTAAACTGCCTGGAGTCAGGAGCTGCAGGAACC
AAGCCGCAAGGCCCTTTCCATTTCCTAACCTTCCCTTTGGGGAAAGCACA
GCCCCGCGCGCGTTCGGCGGCTACGGTCACGGCCCCGTCGTGGGTCTTCC
CGGTCGTGGCGGCAGGGCAGCGAGGTTTCGCGGCCCGGTTCCACACCCGG
CGTCGCATCAGCTCCCGCGGGCTCTGGCGGCCTTCCAGCCCGGTTTCCAG
CCGGATTGCCTTTCTAGCCTAAATGTGTTGCCGCCTTTTTCTTCTAATAC
TATTCACCCCCCCTCTCCTTTTTTTTCTTTCATCCCCCTCTGTCTTCTTC
ATTCATACATCCTTTCCCACCCTCCCCTTTTCGCCTCCATTTCCCTTTTC
ACCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCATTTTTGTCATTAAGTAGTCA
AGAAATAGAGAATTTTAAAAACTATTTAGTACTTGTCATTGTACTGCCTG
GTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCACAGAGAAAGGAGT
TTCAGTTGGGGAAATGCCTCCATGAGATCCAGGTGAAAGGCATTTTTTCA
ATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGC
TGGTAGTCTGGGGTTCTATTATAGAGCAGGCTGAGCAAGCCAGTAAAGAA
CATCCCTCCATGGCTTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGT
TCCAGTCCTGACTTCCTTGGTGATGAACAGCAGCATGGAAGTGTAAGCCG
AATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGGTGTTTGTGCAG
GAATAGAGACCCTGACTAAGACAGCCATCTTGTGTGTTTGTCTACATGTT
GTACGTGTATGCATAAGTACTCAGAACAGGGTGTTGAGGGTCTTCTACCA
TGCTCTGACTATTTCTTTGAGGGCGGGTTTCTTTCGACCTTGTGCCTTGT
GTCTTCCTGTTTAGGTCGAATTTCACCTAGCTTCCTTGATACTTTTTATC
CCTCCTAATCTTTTTGAATTGGTTTATAGCTACATTTCAAATCCTTCCCT
TTTTTTTCTTTTCTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l12.b1 MSMg01no355_l12.b1 CHROMAT_FILE:
MSMg01no355_l12.b1 PHD_FILE: MSMg01no355_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:15 2005
         (459 letters)



>mm_chr4_98787394_98788252
          Length = 859

 Score =  841 bits (435), Expect = 0.0
 Identities = 450/455 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttactggcataactgttcttggagaaaagggcctgggctctgggtctcacgtt 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattctttacagggataactgttcttggagaaaagggcctgggctctgggtctcacgtt 798

                                                                       
Query: 65  cacgggaagagcttgccatgtgtgaccaagggcaagtcacagcttctctgagacaatttt 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cacgggaggagcttgccatgtgtgaccaagggcaagtcacagcttctctgagacaatttt 738

                                                                       
Query: 125 tttctctctaaaatggagctaaatctacttcaaagagctgttgtggagattaagtaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttctctctaaaatggagctaaatctacttcaaagagctgttgtggagattaagtaagat 678

                                                                       
Query: 185 catgcgtgtaagcttggccatgcaccacaaatcagcggttatcacaccacctttgtgtga 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 677 catgcgtgtaagcttggccatgcaccacaaatcagcgattatcacaccacctttgtggga 618

                                                                       
Query: 245 gagttctttctacaaagaagagccattgtttctccagctagaccccactcacgaggtcgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagttctttctacaaagaagagccattgtttctccagctagaccccactcacgaggtcgg 558

                                                                       
Query: 305 ggcgtgcaagaaaggtgctttaaactgcctggagtcaggagctgcaggaaccaagccgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggcgtgcaagaaaggtgctttaaactgcctggagtcaggagctgcaggaaccaagccgca 498

                                                                       
Query: 365 aggccctttccatttcctaaccttccctttggggaaagcacagccccgcgcgcgttcggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggccctttccatttcctaaccttccctttggggaaagcacagccccgcgcgcgttcggc 438

                                              
Query: 425 ggctacggtcacggccccgtcgtgggtcttcccgg 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 437 ggctacggtcacggccccgtcgtgggtcttcccgg 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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