Query= MSMg01no355_m17.b1 MSMg01no355_m17.b1 CHROMAT_FILE:
MSMg01no355_m17.b1 PHD_FILE: MSMg01no355_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:20 2005
(496 letters)
>mm_chr4_35320076_35320966
Length = 891
Score = 909 bits (470), Expect = 0.0
Identities = 488/496 (98%), Gaps = 5/496 (1%)
Strand = Plus / Minus
Query: 1 caaagggggaaaaatatcctctcaaggatgtaataagttaacaaaccaaattagtatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caaagggggaaaaatatcctctcaaggatgtaataagttaacaaaccaaattagtatgta 632
Query: 61 ttggggtctgtggctcttatcatccgcattaacctcggggctctccagggctaatatctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtggggtctgtggctcttatcatccgcattaacctcggggctctccagggctaatatctt 572
Query: 121 tagttgtgctgtttcttgcttgctgtctccagaccactaaccttatttctctgtttctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tagttgtgctgtttcttgcttgctgtctccagaccactaaccttatttctctgtttctct 512
Query: 181 atgggagaattgaaagctctggtctccccaaatctccctctgattttcattctctttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atgggagaattgaaagctctggtctccccaaatctccctctgattttcattctctttggt 452
Query: 241 agagctcagccctcggtgtccaaggtcaaatgaactaagccctttccaagagaagcttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agagctcagccctcggtgtccaaggtcaaatgaactaagccctttccaagagaagcttac 392
Query: 301 gactgactgacacaaaagggggccacactttttagcagacccttgcacccacatcattaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gactgactgacacaaaagggggccacactttttagcagacccttgcacccacatcattaa 332
Query: 361 aatacttctccattagaaatgcaacttctttatgcacgcaaggtcttcagcagtagcacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatacttctccattagaaatgcaacttctttatgcacgcaaggtcttcagcagtagcacg 272
Query: 421 tggagcagcagcgccacctactggcttactcttagcaccagcatgatttttgtttcagcg 480
|||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||
Sbjct: 271 tggagcagcagcgccacctactggctta--ctt---accaacatgatttttgcttcagcg 217
Query: 481 ttggctgaggattggt 496
||||||||||||||||
Sbjct: 216 ttggctgaggattggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 891
Length adjustment: 10
Effective length of query: 486
Effective length of database: 881
Effective search space: 428166
Effective search space used: 428166
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_m17.g1 MSMg01no355_m17.g1 CHROMAT_FILE:
MSMg01no355_m17.g1 PHD_FILE: MSMg01no355_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:20 2005
(497 letters)
>mm_chr4_35161454_35162347
Length = 894
Score = 915 bits (473), Expect = 0.0
Identities = 490/497 (98%), Gaps = 3/497 (0%)
Strand = Plus / Plus
Query: 1 accaggaagtctcctctcaacagccagcttccacattcaaaatgggacataatctatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaggaagtctcctctcaacagccagcttccacattcaaaatgggacataatctatcca 260
Query: 61 aatgcatactgaagttaccacatagaatcagtgagacagaagagtctgcacccgcaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcatactgaagttaccacatagaatcagtgagacagaagagtctgcacccgcaaaac 320
Query: 121 atgaccttgaatttctacttcccggcatcttgtttgcagcataactgcggtgtgtgacat 180
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaccttgaatttctatttcccggcatcttgtttgcagcataactgcggtgtgtgacat 380
Query: 181 gagcgacaccccctaacatttaccaccatttctcccatcagtttatgatcacctaaataa 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gagcgacaccccctaacatttacca---tttctcccatcagtttatgatcacctaaataa 437
Query: 241 gatgctgacattgccaagtgtctatcaatctcagctaaatatatttaaaattatcaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gatgctgacattgccaagtgtctatcaatctcagctaaatatatttaaaattatcaatta 497
Query: 301 cttatactcacctcagtaataaacttgctcatttaagtttcatgaaatgattatttaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttatactcacctcagtaataaacttgctcatttaagtttcatgaaatgattatttaaac 557
Query: 361 ccctcacatctattttaaagttagaacctcaaattaagggttgaggattatattccactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccctcacatctattttaaagttagaacctcaaattaagggttgaggattatattccactt 617
Query: 421 ggtgacagaacagctgcctggcatgtatgaggaggccctaggtctcatcctcaacacacg 480
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 618 ggtgacagaacagctgcctggcatgtataaggaggccctagatctcatcctcaacacacg 677
Query: 481 tgcagaccgggggtggg 497
|||||||||||||||||
Sbjct: 678 tgcagaccgggggtggg 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 894
Length adjustment: 10
Effective length of query: 487
Effective length of database: 884
Effective search space: 430508
Effective search space used: 430508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
