Query= MSMg01no355_n16.b1 MSMg01no355_n16.b1 CHROMAT_FILE:
MSMg01no355_n16.b1 PHD_FILE: MSMg01no355_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:25 2005
(427 letters)
>mm_chr4_153763282_153764108
Length = 827
Score = 789 bits (408), Expect = 0.0
Identities = 420/424 (99%), Gaps = 2/424 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcttgtcctctgtcactttaggtaaagtgcagcattggagaagagctttcctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcatcttgtcctctgtcactttaggtaaagtgcagcattggagaagagctt-cctt 263
Query: 65 ccccacacacaggtgggttgtgcccaatgggacccagactagtccctgtggataaagacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccccacacacaggtgggttgtgcccaatgggacccagactagtccctgtggataaagacc 323
Query: 125 ttgagcaatgatgtaggttgcagggacgcaaccaggggaatagcagtgcctgctagaggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgagcaatgatgtaggttgcagggacgcaaccaggggaatagcagtgcctgctagaggt 383
Query: 185 tacactta-gattctccagcaaggcattttgagacaccaaggcaaatgcagaggacctct 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacacttaagattctccagcaaggcattttgagacaccaaggcaaatgcagaggacctct 443
Query: 244 gaaccgctacctggaaaggctccttctggggtcctgtcaatcttcaaggtgtgacaagaa 303
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 444 gaaccgctacctggaaaggctccttctggggccctgtcaatcttcaaggcgtgacaagaa 503
Query: 304 acatccctagcttctgcctgtcggccctgaggctctttggctgcaggctatgactctgag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatccctagcttctgcctgtcggccctgaggctctttggctgcaggctatgactctgag 563
Query: 364 caagagtcccaggcagcccatctcatgcctttctaccaacctcaggcatttcacacacag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caagagtcccaggcagcccatctcatgcctttctaccaacctcaggcatttcacacacag 623
Query: 424 ttaa 427
||||
Sbjct: 624 ttaa 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_n16.g1 MSMg01no355_n16.g1 CHROMAT_FILE:
MSMg01no355_n16.g1 PHD_FILE: MSMg01no355_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:25 2005
(446 letters)
>mm_chr4_153928918_153929764
Length = 847
Score = 847 bits (438), Expect = 0.0
Identities = 445/448 (99%), Gaps = 3/448 (0%)
Strand = Plus / Minus
Query: 1 tcttcaggagaagaaagggaccactccattgttacaacacctctgctcgtgtgcagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tcttcaggagaagaaagggaccactccattgttacaacacctctgctcgtgtgcagcacc 588
Query: 61 ttctgcccgcttccatttttctctctcctggtgcgagca--gtttctgactcaaggcagg 118
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 587 ttctgcccgcttccatttttctctctcctggtgcgagcagtgtttctgactcaaggcagg 528
Query: 119 caagaggagacacccactcccagccagtctctatcgctgtcagaacctggcctttgcagt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 caagaggagacacccactcccagccagtctctatcgctgtcagaacctggcctttgcagt 468
Query: 179 tacttgaaaaatggggtcctttcagatcacacccgtcctccactttgcaaaatgagattg 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tac-tgaaaaatggggtcctttcagatcacacccgtcctccactttgcaaaatgagattg 409
Query: 239 tgtctgagggagcaaatgttttcttttattaactaaaagtgaggtggtcgagaggcttcg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtctgagggagcaaatgttttcttttattaactaaaagtgaggtggtcgagaggcttcg 349
Query: 299 ggatttggtgaaaggacagcccgcaccccctcctcaaggggttgatcttgccttttcttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggatttggtgaaaggacagcccgcaccccctcctcaaggggttgatcttgccttttcttt 289
Query: 359 ctctgacccccacgggcagaagccatattctcccattaccctgctctcctcttcagagct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctctgacccccacgggcagaagccatattctcccattaccctgctctcctcttcagagct 229
Query: 419 gttgggtgtaatggactcctttaaatta 446
||||||||||||||||||||||||||||
Sbjct: 228 gttgggtgtaatggactcctttaaatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space: 364932
Effective search space used: 364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
