NNNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCACAATCTATTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCATTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCTCATCTATTCCATT
GGGCTACTTGTCTGGCTCTATACCATGATCATGCCGGTTTTATTCCAATT
TGTTCTGTATTAAAGCTTTATGCCTCGGCCTGTTTTTTCCCCCTATATTT
TCCTTATCTCCTTACATAATTATTTGCTTCTCCCAAGTTTTTTTGTCTTC
CCTTAAATTG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCATCAGAGCATTTTCAA
ATTAACTATTTTGTTTTTACTAGTTTCATTCTCTTTATAAACAAACAAAC
AAACAAACAAACAAACAAACAAGAAGAGCAAAATATATCCCAAACATCCT
GATAATAAGAAATAGTGAGCAGAACACTCATTTTTTTAAAAAATAACACT
TACATATGAATCTCTTCATATGTGTGAGCATGAGGAAGAGTGATTGGCCA
TTTGTAATGGTGGGCTATGAGGTTAGAGGACAGGTTGGGTGATTCCATCT
ATTTTTTTTCCTCAGTATGGATTTCATGGTTTGAATTTGGGTCATTAGGC
TTAGTGTTGAATACCTTTCCCAACTGTACTGCTTCAAAAACCCAAGTTAG
AAATTTTAAAGAAGATATTAGTAAGTTATACTAAAGCATGGGATAATAGT
TAAATATGCTATAATATTTTCATAGTTTTTGTTAAATGCCTCAAGTTTAA
GGCCTGCTATTTTTGGCATATATACTTTAATTTATACCTCTTATCTTTCA
CTGATACCGAGAGCAACAGGAGAATCCATAATTAGCTAAAACTTACCATC
TCTCAAAACGTTTCAAGTGACCAGGAAATTTTAGAAATAATAAACCTATT
TTACCTACCTCTGCGCTTCCTAAAAAATTTTTATAAAACTTTATACAAGG
GGGTTTTACTTTTAN

Query= MSMg01no355_p23.g1 MSMg01no355_p23.g1 CHROMAT_FILE:
MSMg01no355_p23.g1 PHD_FILE: MSMg01no355_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:36 2005
         (444 letters)



>mm_chr4_27054005_27054852
          Length = 848

 Score =  698 bits (361), Expect = 0.0
 Identities = 416/449 (92%), Gaps = 26/449 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcatcagagcattttcaaattaactattttgtttttactagtttcattctctttataa 60
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  
Sbjct: 526 tgtcatcagagcattttcaaatgaactattttgtttttacaagtttcattctctttat-- 469

                                                                       
Query: 61  acaaacaaacaaacaaacaaacaaacaaacaagaagagcaaaatatatcccaaacatcct 120
                     ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 468 ----------aaacaaacaaacagacaaacaagaagagcaaaatatatcccaaacatcct 419

                                                                       
Query: 121 gataataagaaatagtgagcagaacactcattttttt-----aaaaaataacacttacat 175
           |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||
Sbjct: 418 gataataagaaatagtgagcagaacactcattttttttttaaaaaaaataacacttacat 359

                                                                       
Query: 176 atgaatctcttcatatgtgtgagcatgaggaagagtgattggccatttgtaatggtgggc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgaatctcttcatatgtgtgagcatgaggaagagtgattggccatttgtaatggtgggc 299

                                                                       
Query: 236 tatgaggttagaggacaggttgggtgattccatctattttttttcctcagtatggatttc 295
                   ||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct: 298 --------tagaggacaggttgggtaattccatc-aatttttttcctcagtatggatttc 248

                                                                       
Query: 296 atggtttgaatttgggtcattaggcttagtgttgaatacctttcccaactgtactgcttc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 247 atggtttgaatttgggtcattaggcttagtgttgaatacctttcccaactgtactacttc 188

                                                                       
Query: 356 aaaaacccaagttagaaattttaaagaagatattagtaagttatactaaagcatgggata 415
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 187 aaaaacccaagttagaaattttaaagaatatattagtaagttatactaaagcatgggata 128

                                        
Query: 416 atagttaaatatgctataatattttcata 444
           |||||||||||||||||||||||||||||
Sbjct: 127 atagttaaatatgctataatattttcata 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 848
Length adjustment: 10
Effective length of query: 434
Effective length of database: 838
Effective search space:   363692
Effective search space used:   363692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)