Query= MSMg01no356_d08.b1 MSMg01no356_d08.b1 CHROMAT_FILE:
MSMg01no356_d08.b1 PHD_FILE: MSMg01no356_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:52 2005
(492 letters)
>mm_chr4_21935189_21936080
Length = 892
Score = 839 bits (434), Expect = 0.0
Identities = 476/492 (96%), Gaps = 4/492 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaaaagtaaggaggaacaaacaaacaaacaaacaaacaaac----ctcagcat 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gaattctcaaaagtaaggaggaacaaacaaacaaacaaacaaacaaacaaacctcagcat 260
Query: 61 ctctcacaactttagcccacccttccttctaccaaccaacactctttgatctgaatccta 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctctcacaactttagcccacccttccttctaccaaccaacagtctttgatctgaatccta 320
Query: 121 aatacgtgtatgattctgctgtatattatcaaggattctcaataacaaacaccttacact 180
||||||||||||||||||||||||| | ||||| |||||| ||||| |||||||||||||
Sbjct: 321 aatacgtgtatgattctgctgtatactctcaagaattctccataaccaacaccttacact 380
Query: 181 aaacgatgtttgtaacgaaggcatgaaggatgtaacaatgtatcttaaaatagatatgga 240
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aaacgatgtttgtaacgaagggatgaaggatgtaacaatgcatcttaaaatagatatgga 440
Query: 241 gtgtgtcttcagaaggcaaaaacctggttttatcaatggcattctagttgcccggatgtc 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtcttcagaaggcaagaacctggttttatcaatggcattctagttgcccggatgtc 500
Query: 301 agtggtatggaatatttgtgtgcataccttatgctttaatatcatctacatgtttccttg 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtggtatgggatatttgtgtgcataccttatgctttaatatcatctacatgtttccttg 560
Query: 361 aagaagcttccttaaaggagcatccccaagtcactgcacattagctttctttcctgcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaagcttccttaaaggagcatccccaagtcactgcacattagctttctttcctgcaag 620
Query: 421 tcgagtcctgggaagctatacagagacccgaggatgaaattctccgagaagtccatcgtg 480
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 621 tcgagtcctgggaagctatacagagacctgaggatgaaattctctgagaagtccatcgtg 680
Query: 481 aaatgcttgtgg 492
||||||||||||
Sbjct: 681 aaatgcttgtgg 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_d08.g1 MSMg01no356_d08.g1 CHROMAT_FILE:
MSMg01no356_d08.g1 PHD_FILE: MSMg01no356_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:52 2005
(439 letters)
>mm_chr4_22067698_22068543
Length = 846
Score = 646 bits (334), Expect = 0.0
Identities = 401/450 (89%), Gaps = 45/450 (10%)
Strand = Plus / Minus
Query: 1 ctcactcgcacttcatctctgactgcttatttctgtgctaacgtcacagttttagcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctcactcgcacttcatctctgactgcttatttctgtgctaacgtcacagttttagcttta 743
Query: 61 gcagtatgcctcaatgacagagctagtatgtacaaggctcaaggatttgtcctcagcacc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 742 gcagtatgcctcaatgacagagctagtatgtacaaggctcaaggatttgtccccagcacc 683
Query: 121 acacccacagagacagacagagacagagacagagacagagacagagacagagacagagac 180
|||||||||||||| ||||||||||||||||
Sbjct: 682 acacccacagagac------------------------------agacagagacagagac 653
Query: 181 agagactcaagttttccaatctaaatgaaaaacttatatctctcaaatgaaagaaaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agagactcaagttttccaatctaaatgaaaaacttatatctctcaaatgaaagaaaccct 593
Query: 241 aagaaatttaacttcagggcttagaaagataacgttcaccataggagtaagtatgaccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aagaaatttaacttcagggcttagaaagataacgttcaccataggagtaagtatgaccat 533
Query: 301 ttagaaacaatacataaatgattctgggcagccttacatcatagaagcccaatctgattt 360
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 532 ttagaaacgatacataaatgattctgggcagctttacatcatagaagcccaatctggttt 473
Query: 361 cttcctctataaacgtcctctataa------acccaactcaacaaactgtgttgt----- 409
||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 472 cttcctctataaacgtc-t---taatgttctacccaactcaacaaactgtgttgtgttgt 417
Query: 410 atggtaatgtgatggttgttaatggtggtg 439
||||||||||||||||||||||||||||||
Sbjct: 416 atggtaatgtgatggttgttaatggtggtg 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 846
Length adjustment: 9
Effective length of query: 430
Effective length of database: 837
Effective search space: 359910
Effective search space used: 359910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
