AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCCAGTCTAGGGTTACAAAGTGAGTGAAACCCTGTCTCAAAGA
AGAGAAGAGAAGAGAAGGTACATTTCCTTTCCTAAGCAACCCTGCTGGCA
GTTCCCCCCTGTGTGACTAATTCTGTTACTGAGGATTAAGGATACAAGGT
GAGCTCTGAAGGGGACGTGATGGTAGGCTTGTGGGGTGACTGCTAGGTAC
CTCTAGAGGGCAACACTTACACAGGAAAACAGTCTTAAGAAATGATGGGG
AAACATCATGCACGGCCCACACAGCAGTGCAGAGAAATTGCTTGTGTTAA
CATCTCAGACCTGGGCTTTTATTTGCTCCAAATTTGTATGGGTTTTGCCC
TCAGAGCTTGTCTCTTTTTCACTTCTGTCTCTTTTAGGCACAATTACTGA
TCTGCAACAACAGACTCCCATTTCTTAAACGGGAGCTTGACCATATCACA
AAGTTGTAAAACAATCTCCATGGTTATTAGCTAATTAAACTTGAATCCAA
CACCATATGGTGATAGCAGGCGGCAAAGGATAAGATTGAGATCTTAGATC
TTTCCCAGCAGGGTATGTTAGATGATATTAGGAGACAAGGCCTGTTTTGC
ACTTATATAAATTTCCCTTCTTGACATTGACATATTACATGGGTTGCAAA
ACCTGTGGCTCTCGAAACTCTGTTTAAAGAGCCTTTGTTTTCTTTAAAAA
GA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGATTAGTGGGAAACTGTTTCAAAA
GTAAGGTAAAATTGAGGAAGAAGTTGGACAGGTCTTAGTCCCTAGGTTTG
CCTAGAGCTCTCTATGTAACAGTGACTTCAACTCTTGATCCCCCTGCCTC
AGCCTGGAAAGTGCTATGATTATAGGCCTAAGCCACCAAAGCTACCTCAT
CTTTACTTTATACATTTCTGTATGGTTTGTATTTTTACAGCAAGGATGCA
TAGCAGAGATAGCCTCCCCACCCACCCTACCTCTGTATGTATTGGGGGAG
GGGTGNCTGTGTNTTTTGTGTNTCNATGTATGTCTTCTGTCGGCTTTTCC
CTTTGCCCCTGTTCCCCTCTTTCCTTTTGCTGCCTTTTTTCCCGCCTTCC
TTTCCTTTCTCCTCTTTTCTCTTTTCCCTGTTTTGCTTCTCTTCTTTCCC
CTTTTGTTCTTTTTTCTGTCTCTTTTTTTTTTCTGTTTTCTTTTCCTTTC
CCTTTCTTTTTCTTCTTTTTTTTTTCTCGTCTTTTTGCTTTTCCCCCCTC
TTTTTTCGTTCCCTGCCCTGTCCTCCTTGTCTTTCTTCTTTCCCCGTCCT
TGTTTTGTCTTTTTTTTTCCTTTTCTTTTCTTCATTTTTTTGGTTTCTAA
TCTCCCTTACCTTTTTCCTATATCCCTTTGCTGTTTACCTCTTCCTTTTT
GTTTCCCTCTTTTCCCTCTTTTTTT

Query= MSMg01no356_f08.b1 MSMg01no356_f08.b1 CHROMAT_FILE:
MSMg01no356_f08.b1 PHD_FILE: MSMg01no356_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:02 2005
         (540 letters)



>mm_chr4_122534757_122535696
          Length = 940

 Score = 1013 bits (524), Expect = 0.0
 Identities = 533/536 (99%), Gaps = 1/536 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggccagtctagggttacaaagtgagtgaaaccctgtctcaaagaagagaaga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattccaggccag-ctagggttacaaagtgagtgaaaccctgtctcaaagaagagaaga 753

                                                                       
Query: 65  gaagagaaggtacatttcctttcctaagcaaccctgctggcagttcccccctgtgtgact 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gaagagaaggtccatttcctttcctaagcaaccctgctggcagttcccccctgtgtgact 693

                                                                       
Query: 125 aattctgttactgaggattaaggatacaaggtgagctctgaaggggacgtgatggtaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aattctgttactgaggattaaggatacaaggtgagctctgaaggggacgtgatggtaggc 633

                                                                       
Query: 185 ttgtggggtgactgctaggtacctctagagggcaacacttacacaggaaaacagtcttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttgtggggtgactgctaggtacctctagagggcaacacttacacaggaaaacagtcttaa 573

                                                                       
Query: 245 gaaatgatggggaaacatcatgcacggcccacacagcagtgcagagaaattgcttgtgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 572 gaaatgatggggaaacatcatgcacggcccacacagcagtgcagagaaattgcttgtgtg 513

                                                                       
Query: 305 aacatctcagacctgggcttttatttgctccaaatttgtatgggttttgccctcagagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aacatctcagacctgggcttttatttgctccaaatttgtatgggttttgccctcagagct 453

                                                                       
Query: 365 tgtctctttttcacttctgtctcttttaggcacaattactgatctgcaacaacagactcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtctctttttcacttctgtctcttttaggcacaattactgatctgcaacaacagactcc 393

                                                                       
Query: 425 catttcttaaacgggagcttgaccatatcacaaagttgtaaaacaatctccatggttatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 catttcttaaacgggagcttgaccatatcacaaagttgtaaaacaatctccatggttatt 333

                                                                   
Query: 485 agctaattaaacttgaatccaacaccatatggtgatagcaggcggcaaaggataag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agctaattaaacttgaatccaacaccatatggtgatagcaggcggcaaaggataag 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)