BAC Information

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BAC

Clone NameMSMg01-356G18
Chromosome4 (Build37)
Map Location 86,342,330 - 86,458,661
singlet/doubletdoublet
Overlap geneEG624685, Dennd4c
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp
Downstream geneRps6, Asah3l, Slc24a2, Mllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356G18.T7 (MSMg01no356_g18.b1)MSMg01-356G18.TJ (MSMg01no356_g18.g1)
ACCAG466568AG466569
length771775
length of high quality
(start - end)		588 (35 - 622)480 (65 - 544)
definitionCHROMAT_FILE: MSMg01no356_g18.b1 PHD_FILE: MSMg01no356_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:08 2005CHROMAT_FILE: MSMg01no356_g18.g1 PHD_FILE: MSMg01no356_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,458,123 - 86,458,661)(86,342,330 - 86,342,809)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAGG
TGATTGAACCTGAAGTAGTCATTCACACAGACAGGGGCAGGAGGGGAGCA
GTAAAGAGCTGTTGGTCGACAGTCAGGCAGAAGGAATAAATTTAAGAGAT
CTACTGCTTAACATGGCAACTATAGTTAATAACACCACAAAAATCAGTAA
ATGAGTATGTTAATTAGCTTGATGAAGCCATTTCAAAATATATCCACATT
TCAAAACATGTTGTTTATAATTTATACAATTCTGTTAATGAAGATGGGAG
ACCAACCTCCTTTTAACATAAGTTTAACAAATAATAAAACATTTTTAGCA
AATATGCTACCCTGACTAGCATTAATCCAACTCACCTTATTGTAATAGCC
ATAAGTGATAGCATTTGGTTTTATTCTAGCAGTTTTCATCTCGAATAAGA
CTCTCACTGCTAAAACAGGATTAACCCAAAGTCCACAAAGCTGCATGACT
ACTCGATAGCACACCTGACAAGAGGAACAACAATGCATAAATCCTTAGCA
TATTCATTTACTTGAGACTTACAGAGATTTAAAAAAGGTTCTACTCAATC
AGGGTGGTTAGGAGGGGGCAGAGGCGGGAGGATCAGGAATTCAAGGCCAT
CTATACACAGTGACTTCCAGACTAGAATAGTTACAGAAAACTTTTGTCTA
AGAAAACCAATAACATACCCCATTATACTCTATTCAACCTAACAAATAAT
CCATTGGATTATTTCACGCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAAATTCAGGCTGGAGAAGTGCCTCAGTGATTATGA
ACACTTGCTGATTTTTGCAAAGGATCTGGGTTCAAGGCCCAGTACCCACA
TGGTGGCTCATAACCATCCCTAACTCTAGCTGCCTCTGTGGACATCGAGT
ATGCACGTGGTGCACAGACACACATGCAAGCAAAACCTCATGCATATAAA
AATGAAATACATTTTTTTGGAGACAGTTTCTTTGTGTAGCCCTGGCTGTC
CTGGGACTTTCCTCAGACCAGGCTGGCTTTAAACTCAAAGATTCACCTGC
TTGTTTCTCCCGAGTTCTGGGGTTAAAGGCGTGCTCCCCAAGCCCAACTT
GAAATGAATGTTTTTTTTTAATTATTTTAAAGAGTTAAAAGTCATTCTCA
GTTACAAAGTAAGTTGGGAGCCAGCCTTGTCTACATATATCCTTGTAAAA
AAAAAAATCAAACAAAACATATGGAGAACACATTTTTCGACACAGATGAG
AGAATTGGGGGGTATAATCAGCAAGAACATACAGTTTCTAATTACTTGAC
TACCCATACACATTCTGACCGTGGTATCTGGAGCATCCCGGTAAAAAAAG
CTCAAATTTTCAATGTTTTCTCTTTTGCTCCCTCTTTTTGGTCCCTGATG
ACACCCCCCGCTCAGCCTTTAATTCCCTCCATTATATTCCTTTTTTCCCT
CCCCTTCCTTTTTTCCTTTTCTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_g18.b1 MSMg01no356_g18.b1 CHROMAT_FILE:
MSMg01no356_g18.b1 PHD_FILE: MSMg01no356_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:08 2005
         (588 letters)



>mm_chr4_86457674_86458661
          Length = 988

 Score = 1035 bits (535), Expect = 0.0
 Identities = 538/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 48  caggggcaggaggggagcagtaaagagctgttggtcgacagtcaggcagaaggaataaat 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 caggggcaggaggggagcagtaaagagctgttggtcgacagtcaggcagaaggaataaat 929

                                                                       
Query: 108 ttaagagatctactgcttaacatggcaactatagttaataacaccacaaaaatcagtaaa 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 ttaagagatctactgcttaacatggcaactatagttaataacaccacaaaaatcagtaaa 869

                                                                       
Query: 168 tgagtatgttaattagcttgatgaagccatttcaaaatatatccacatttcaaaacatgt 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgagtatgttaattagcttgatgaagccatttcaaaatatatccacatttcaaaacatgt 809

                                                                       
Query: 228 tgtttataatttatacaattctgttaatgaagatgggagaccaacctccttttaacataa 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgtttataatttatacaattctgttaatgaagatgggagaccaacctccttttaacataa 749

                                                                       
Query: 288 gtttaacaaataataaaacatttttagcaaatatgctaccctgactagcattaatccaac 347
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 748 gtttaacaaataataaaacatttttagcaaatatgctaccctgactagtattaatccaac 689

                                                                       
Query: 348 tcaccttattgtaatagccataagtgatagcatttggttttattctagcagttttcatct 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcaccttattgtaatagccataagtgatagcatttggttttattctagcagttttcatct 629

                                                                       
Query: 408 cgaataagactctcactgctaaaacaggattaacccaaagtccacaaagctgcatgacta 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cgaataagactctcactgctaaaacaggattaacccaaagtccacaaagctgcatgacta 569

                                                                       
Query: 468 ctcgatagcacacctgacaagaggaacaacaatgcataaatccttagcatattcatttac 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctcgatagcacacctgacaagaggaacaacaatgcataaatccttagcatattcatttac 509

                                                                      
Query: 528 ttgagacttacagagatttaaaaaaggttctactcaatcagggtggttaggagggggca 586
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttgagacttacagagatttaaaaaaggttctactcaatcagggtggttaggagggggca 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_g18.g1 MSMg01no356_g18.g1 CHROMAT_FILE:
MSMg01no356_g18.g1 PHD_FILE: MSMg01no356_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:08 2005
         (480 letters)



>mm_chr4_86342130_86343009
          Length = 880

 Score =  882 bits (456), Expect = 0.0
 Identities = 474/480 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattcaggctggagaagtgcctcagtgattatgaacacttgctgatttttgcaaagga 60
           ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aaaattcaggctggagaagtgtctcaatgattatgaacacttgctgatttttgcaaagga 260

                                                                       
Query: 61  tctgggttcaaggcccagtacccacatggtggctcataaccatccctaactctagctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgggttcaaggcccagtacccacatggtggctcataaccatccctaactctagctgcc 320

                                                                       
Query: 121 tctgtggacatcgagtatgcacgtggtgcacagacacacatgcaagcaaaacctcatgca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgggcatcgagtatgcacgtggtgcacagacacacatgcaagcaaaacctcatgca 380

                                                                       
Query: 181 tataaaaatgaaatacatttttttggagacagtttctttgtgtagccctggctgtcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataaaaatgaaatacatttttttggagacagtttctttgtgtagccctggctgtcctgg 440

                                                                       
Query: 241 gactttcctcagaccaggctggctttaaactcaaagattcacctgcttgtttctcccgag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gactttcctcagaccaggctggctttaaactcaaagattcacctgcttgtgtctcccgag 500

                                                                       
Query: 301 ttctggggttaaaggcgtgctccccaagcccaacttgaaatgaatgtttttttttaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 501 ttctggggttaaaggcgtgctccccaagcccaacttgaaatgaatattttttttaaatta 560

                                                                       
Query: 361 ttttaaagagttaaaagtcattctcagttacaaagtaagttgggagccagccttgtctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaaagagttaaaagtcattctcagttacaaagtaagttgggagccagccttgtctac 620

                                                                       
Query: 421 atatatccttgtaaaaaaaaaaatcaaacaaaacatatggagaacacatttttcgacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatatccttgtaaaaaaaaaaatcaaacaaaacatatggagaacacatttttcgacaca 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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