Query= MSMg01no356_i15.b1 MSMg01no356_i15.b1 CHROMAT_FILE:
MSMg01no356_i15.b1 PHD_FILE: MSMg01no356_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:17 2005
(468 letters)
>mm_chr16_45328104_45328971
Length = 868
Score = 905 bits (468), Expect = 0.0
Identities = 468/468 (100%)
Strand = Plus / Minus
Query: 1 gggttaatggaaggcctcatcttctctctcagcctgcctcatcctgtttcctgatttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gggttaatggaaggcctcatcttctctctcagcctgcctcatcctgtttcctgatttcta 609
Query: 61 taatgtctactgtctccatttttagccatttttttcatttacccttttgatctgcacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 taatgtctactgtctccatttttagccatttttttcatttacccttttgatctgcacaaa 549
Query: 121 aagcctgctttttgtatcaaagaggtattatgtaatttgcatgctgtcattatgaccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aagcctgctttttgtatcaaagaggtattatgtaatttgcatgctgtcattatgaccatg 489
Query: 181 aatttccttcaattaattcactgagttgtttttgtagagggaagtgttacaaaggcttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aatttccttcaattaattcactgagttgtttttgtagagggaagtgttacaaaggcttat 429
Query: 241 gggaaaacacattatataataagactattcatagaaatgcaagataacttcttgttaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gggaaaacacattatataataagactattcatagaaatgcaagataacttcttgttaaaa 369
Query: 301 ttaactcttatattgaccctcaattctttttaaaaaattttctcaaagcacatttttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttaactcttatattgaccctcaattctttttaaaaaattttctcaaagcacatttttgtt 309
Query: 361 caagtactgaaagaagtccattgacatcagattcaagtaccatgaaaattgggggggggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 caagtactgaaagaagtccattgacatcagattcaagtaccatgaaaattgggggggggg 249
Query: 421 gattagaaactgtgatccaaagatgcaaaattataattttgtgatcca 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gattagaaactgtgatccaaagatgcaaaattataattttgtgatcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_i15.g1 MSMg01no356_i15.g1 CHROMAT_FILE:
MSMg01no356_i15.g1 PHD_FILE: MSMg01no356_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:18 2005
(199 letters)
>mm_chr4_112620614_112621210
Length = 597
Score = 236 bits (122), Expect = 7e-67
Identities = 187/224 (83%), Gaps = 28/224 (12%)
Strand = Plus / Minus
Query: 1 catactgtttatgtgaggctgggtctcactgggttgttcagtctggtcttgaactcactc 60
||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 catactgtttatgagagacagggtctcactgggttgttcagtctggtcttgaactcactc 439
Query: 61 tatagtccaggcag-------------------cct-----ttcaagtaactggattttg 96
|||||||||||||| ||| ||||||||||| |||||||
Sbjct: 438 tatagtccaggcagcccatgatattgtggtcctcctcagccttcaagtaactagattttg 379
Query: 97 aagcagataaaactcattttttttccttcattatagattcttggtacgtttttattttct 156
| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
Sbjct: 378 aggcagataaaactca--ttttttccttcattatagtttcttggtacctttttatttttt 321
Query: 157 a-aggcaaaatacctagaactagatactttataaagaaagtagg 199
| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 ata-gcaaaatacgtagaactagatactttataaagaaagtagg 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 597
Length adjustment: 8
Effective length of query: 191
Effective length of database: 589
Effective search space: 112499
Effective search space used: 112499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
