BAC Information

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BAC

Clone NameMSMg01-356J07
Chromosome4 (Build37)
Map Location 42,994,051 - 42,994,426
singlet/doubletsinglet
Overlap geneVcp
Upstream geneLOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik
Downstream geneFancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356J07.T7 (MSMg01no356_j07.b1)MSMg01-356J07.TJ (MSMg01no356_j07.g1)
ACCAG466688AG466689
length725776
length of high quality
(start - end)		65 (54 - 118)376 (70 - 445)
definitionCHROMAT_FILE: MSMg01no356_j07.b1 PHD_FILE: MSMg01no356_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:21 2005CHROMAT_FILE: MSMg01no356_j07.g1 PHD_FILE: MSMg01no356_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTAAACAACTCACTATATTCAGAGGATCCGCGAAATTCTCANTATCT
TGAAATGCACATTTANAATTACTCTTAATATTATAATGCCATCTTTCATT
ATCTTCAAACTGGCTGTACAAGGGTTTTTTTTCNCNNCCAATCTATTGGG
NTATATTTTTTGAAGGATATCTGGGAAGGGGAAGTGTTTACCTTGTGGGG
GGGTGTGGGGGGGTGGGGGGGGGGGTGGGAGGGGGGGGCGGGGGGGGGGG
GGGGGGGTGAATATNNNNNATTNNNTTGAAAAAGTTTGTTTTTTTTGTCT
TAAAAACAAAANNNAAATAAAAAAAAATTTTTAAAAATTNNNNAAANNNN
NCAAACCCCCCAAAAAAAATCCCCGCCCCCCAATTCCCTTTAAAAAACCA
AAAAAACCAAAATTNCCNTCTAAAACTCCCCNCCCCCNNNNNNCACCTCA
AAAAAAAAAAACCCAAAAAAAACCNNCAACCAAAAAAAAAAAAAAAAAAA
AAACAACCCCCCCCNNCCCAAAAACCCCCCCCAAACCCCCNCAAACCCCC
ACAAAAAATAAAAAAACCCTTTTCACTTTACCCACCCACAAACCCTCCTC
NCCCAACAACACAAACAAAAAAACAANCACAACAACCCCCAACACCACAC
CACCCCCCATACACCCATTACAACCCTCCANCCCCTTACACNCCCAATCC
CATTATATTTTTTTTTTTTTTTTTG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTACCAGTAGTTGCCAGGGTCTTAGGAAAGG
AAAAAGATACTGAACATTTTCATATCCCAACTGTTGTTGCAGTTAGTGAA
TTTAGACAGGTATGTGAGAAACATGGAAATTGGTAGCTAAAAAGGGTGTA
AGACTACCATCTTAATAAATCTTACAACCCTACTAGAAGTTATTTGGTCT
CTTATTCCTTTATTCAAAGCTCTCTTTAAAATTTAAAATATTCAAAGCTA
TTGAGAATTAACTCCAACTGCTACGATTTATGAGACTAACTCCTAGCACC
AATTGTTTTAAGGAGCTTCTTAGAGGAAAGAGTAATGTCACATAGACCAT
TCCTCTAAAAGATAAAGAAAGCCCCTTGTTCTTTTTTTTTTTGTTGTTTT
GGNTTTTTCNANANNNNTTTTCTCTGTGTACCTCTGTTTGCTCTTGTAAT
CTCTCTGCATACTCCTCAGTTTCCCTCCCTTTAATCCTTCTCCCCCCCCT
TTCTTTTTTTTTGTCCCATTAAGACTTCCCTTGCCTTCCCTTCTCCTTCT
ACTCTCCTTCTTTTTCCTTTTCTTCCCCCCCTTTTTCCTTCTACTTTTTC
CAACCATTTCAATTCCTTTTATCCTTTCCTTCTTCCATCCTTTTCACTTT
TATTTCCTCTTTTTTTTTTACTTCTTTCTCTTATTTTTTCCTTTCTCCTC
ACCTATTTTTTCCATTTGTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_j07.g1 MSMg01no356_j07.g1 CHROMAT_FILE:
MSMg01no356_j07.g1 PHD_FILE: MSMg01no356_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:21 2005
         (376 letters)



>mm_chr4_42993851_42994626
          Length = 776

 Score =  727 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaccagtagttgccagggtcttaggaaaggaaaaagatactgaacattttcatatccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaccagtagttgccagggtcttaggaaaggaaaaagatactgaacattttcatatccca 260

                                                                       
Query: 61  actgttgttgcagttagtgaatttagacaggtatgtgagaaacatggaaattggtagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgttgttgcagttagtgaatttagacaggtatgtgagaaacatggaaattggtagcta 320

                                                                       
Query: 121 aaaagggtgtaagactaccatcttaataaatcttacaaccctactagaagttatttggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagggtgtaagactaccatcttaataaatcttacaaccctactagaagttatttggtc 380

                                                                       
Query: 181 tcttattcctttattcaaagctctctttaaaatttaaaatattcaaagctattgagaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttattcctttattcaaagctctctttaaaatttaaaatattcaaagctattgagaatt 440

                                                                       
Query: 241 aactccaactgctacgatttatgagactaactcctagcaccaattgttttaaggagcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactccaactgctacgatttatgagactaactcctagcaccaattgttttaaggagcttc 500

                                                                       
Query: 301 ttagaggaaagagtaatgtcacatagaccattcctctaaaagataaagaaagccccttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagaggaaagagtaatgtcacatagaccattcctctaaaagataaagaaagccccttgt 560

                           
Query: 361 tctttttttttttgtt 376
           ||||||||||||||||
Sbjct: 561 tctttttttttttgtt 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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