BAC Information

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BAC

Clone NameMSMg01-356J13
Chromosome4 (Build37)
Map Location 137,561,288 - 137,561,672
singlet/doubletsinglet
Overlap geneEif4g3
Upstream geneZbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558
Downstream geneHp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356J13.T7 (MSMg01no356_j13.b1)MSMg01-356J13.TJ (MSMg01no356_j13.g1)
ACCAG466700AG466701
length836763
length of high quality
(start - end)
44 (64 - 107)416 (68 - 483)
definitionCHROMAT_FILE: MSMg01no356_j13.b1 PHD_FILE: MSMg01no356_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:22 2005CHROMAT_FILE: MSMg01no356_j13.g1 PHD_FILE: MSMg01no356_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXATGCGAGAGAGATGCGCGGAATTCAGTG
TCAATTCGGACTACATGAGACTCTGTCTTATACTGGGGTGGGGGTGGGGG
TGGAGGCCCTCNCACCCCCCTCCCTTTTCACCCTCACCACCCCTCCCCTT
ATACCTAGGAGGCCTCCCCACTTCCTACCCCTCTCCTATACCTAATCCAT
CTCTATACAACCACCTTACCAACTATCACATCATTCCTATTTTTTTTCCA
ATCCATTCACCTACCACCACATCTCTCTCCCACCAAACTCACAAACAAAC
CAAATTTTTTTCTTTATCANCCACTCAATCAAAAACCCACAAACACTATT
TTCCTCCCCCTCCACTACCACTACTATAACCCTATTTAATCTATACAATA
TTCCCCCCCCCCTCTCCCCAATTTTATATCACATTAACCAAACTCCACCT
TATCCTCCAACCCTCCCCTAACTCTATTACCATAAATAAAAAATATAAAA
CATAACTAACTCCTTCCCCCCCTTACATTCTATACTCCACTCCATTTCAC
CACCTCTTATAATTTATCTCACCCATACCCCCTTCTCTCTTTCTCTACAT
CAATTCCCTCTCCCCACATATCCTCTTTTTACCCACCTCTTTTCATACTC
TCTCTACTTTCTCTCTTTATTCCTTTCCCCCATCCAATTCCCTATCACTA
ATATATACCACACTACTAACCCATCTCCAATACGCTCACCCACACACCCA
CAACACACTTCCTTAATAACCACTCCACACCATATCCCCATACCAACAAA
CCTATACCCACTATCACACTTATCCAAATCTAAATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTCCAACTTAAAGGGGTTAGAGCCGGGTGGT
GGCGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGAT
TTCTGAGTTCGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCA
GGGCTATACAGAGAAACCCTGCCTCGAAAAACAAACAAGCAAACAAACAA
AAGAACAGAAAAAAAGAAAAACCCAAAAAAAAAAAAAAGAAAAGAAAACT
TTACCTTCATTTTTTTTCTTATTTGGATGTGTATATGCACAAACCAGGTG
TGGATGGGTACTCAGAAGCCAGAAGTGGGTGTAGGGTCTGCTGAAGCTGG
AATTATAGGCAGTTTTGAGCTTAAGGACCCTCTTAGCCACTGAGCCACCT
CCCCAGACACTCTTTGTAACTTTTTTTTTTTTAAGAATGACAAGAGCCTA
ACATAGCCCTCTTCTTAGATACTTCTTTCAGCAGCCGGATGGAAACCGAT
GGTTAGAATCCCTGCCCCATTCCTATTTTGAATTCCTGGGGTATCCCCGG
GGTATAATAAATCTTAATATCCGGTGGAACCTTAAGCGTCCCCTTTAACC
CCCCTAATAATCCTTTTGAAAAAAATTATCCCGGTGTTTTCTTTTCTCGC
GCGCCCCTTTTTAAACTTTTTCCCTTTTCTTAACTATTGCGCCCGTTTTG
TCCTTCATCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_j13.g1 MSMg01no356_j13.g1 CHROMAT_FILE:
MSMg01no356_j13.g1 PHD_FILE: MSMg01no356_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:22 2005
         (416 letters)



>mm_chr4_137560857_137561672
          Length = 816

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  gtggcggcgcacacctttaatcccagcacttgggaggcagaggcaggcggatttctgagt 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtggcggcgcacacctttaatcccagcacttgggaggcagaggcaggcggatttctgagt 757

                                                                       
Query: 92  tcgaggccagcctgatctacaaagtgagttccaggacagccagggctatacagagaaacc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tcgaggccagcctgatctacaaagtgagttccaggacagccagggctatacagagaaacc 697

                                                                       
Query: 152 ctgcctcgaaaaacaaacaagcaaacaaacaaaagaacagaaaaaaagaaaaacccaaaa 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 696 ctgcctcgaaaaacaaacaagcaaacaaacaaaagaacagaaaaaaagaaaaaccaaaaa 637

                                                                       
Query: 212 aaaaaaaaaagaaaagaaaactttaccttcattttttttcttatttggatgtgtatatgc 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaaaaaaaaagaaaagaaaactttaccttcattttttttcttatttggatgtgtatatgc 577

                                                                       
Query: 272 acaaaccaggtgtggatgggtactcagaagccagaagtgggtgtagggtctgctgaagct 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acaaaccaggtgtggatgggtactcagaagccagaagtgggtgtagggtctgctgaagct 517

                                                                       
Query: 332 ggaattataggcagttttgagcttaaggaccctcttagccactgagccacctccccagac 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattataggcagttttgagcttaaggaccctcttagccactgagccacctccccagac 457

                                    
Query: 392 actctttgtaactttttttttttta 416
           |||||||||||||||||||||||||
Sbjct: 456 actctttgtaactttttttttttta 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)