TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTACACCCCTTACCCCATAAAAACCCCTAGCTTTTGAG
TCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCATGTCGGTCCGG
AGCTCTGTATTTAAACGACCTCATGTTATTACATCAAGATGGTCCTTTGT
GATTTTTTGGGTGCACGCTGAATCGGGAATGGAATGGGGGTTTCCCCACT
AGGTTCTAACACAACCACTGAGGCTATTAAAGTCTTGTCTATTTGTCATC
CTTGGTCCACATAACACCTGCCATCGCATGGGTAGCTATGGTGTTCTATT
ATGCTTTCATGATTGTTAAAACCCTTACAGCAGTCCTCCAAAGTCTATAC
GATTCCCAGTTTATAGAAGAGATCAGTATATAACTTATACATAAGGTATG
AACGGAATTGAAATCAAAAGTCTTGTGATCCAATGTTTAAAATGCTCTTG
CTTTTTACTCTGTCGTGCCTCCCATGGGAACGTGATGGTAGCTGTGAGTC
AGCCTGACTTTCACTGTCTTGGGTTTGCCACTCTCATGTCAGGATTCCTA
AGTATGCTGACTGTCTGCGGAATTTCTTCAGTAACACCACCACCACCTCC
AAATTAGATTCTGTTCCCATTACTCGATAAAAATTTACAAGTAAATTTTT
GATTATTACCTCTTCCATCCTAAGAACTGTTTTTCAAACTACG

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGNGAA
AAAGTTTGTGCAGAACTGCAATTATATCTTCTTTGAAGGTTCGATCGAAC
TCTGCACTAGACTCGTCTGCGCCTGTGCTCGTTTTTGCGTGCCACACGTT
CCGTAACGGCTTTTAACGTCTCGTGTGGATGTTGTGATTTGTTAGTAATT
TCCCTTGTCCGCTACGTTCCCTTCGTTCCCTCGTTCTCTGTTATTACGTT
TTCGTTTTTTTCGTTCTGTTTTTTCGTTTTCGTACTCGTCCGCCTTTCGC
ATATTTTCCCTCGCGTCTCGTTTCGTCGTTTTTGTTATCCGGCTTCTTTC
CGTCCTTTTT

Query= MSMg01no357_a08.b1 MSMg01no357_a08.b1 CHROMAT_FILE:
MSMg01no357_a08.b1 PHD_FILE: MSMg01no357_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:55 2005
         (531 letters)



>mm_chr4_48790100_48791030
          Length = 931

 Score = 1011 bits (523), Expect = 0.0
 Identities = 526/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacacccctacaccccttaccccataaaaacccctagcttttgagtctcgtggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacacccctacaccccttaccccataaaaacccctagcttttgagtctcgtggc 264

                                                                       
Query: 65  cgacatccgttatctcctgtgtgggatgcatgtcggtccggagctctgtatttaaacgac 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgatatccgttatctcctgtgtgggatgcatgtcggtccggagctctgtatttaaacgac 324

                                                                       
Query: 125 ctcatgttattacatcaagatggtcctttgtgattttttgggtgcacgctgaatcgggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatgttattacatcaagatggtcctttgtgattttttgggtgcacgctgaatcgggaa 384

                                                                       
Query: 185 tggaatgggggtttccccactaggttctaacacaaccactgaggctattaaagtcttgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggaatgggggtttccccactaggttctaacacaaccactgaggctattaaagtcttgtc 444

                                                                       
Query: 245 tatttgtcatccttggtccacataacacctgccatcgcatgggtagctatggtgttctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatttgtcatccttggtccacataacacctgccatcgcatgggtagctatggtgttctat 504

                                                                       
Query: 305 tatgctttcatgattgttaaaacccttacagcagtcctccaaagtctatacgattcccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgctttcatgattgttaaaacccttacagcagtcctccaaagtctatacgattcccag 564

                                                                       
Query: 365 tttatagaagagatcagtatataacttatacataaggtatgaacggaattgaaatcaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttatagaagagatcagtatataacttatacataaggtatgaacggaattgaaatcaaaa 624

                                                                       
Query: 425 gtcttgtgatccaatgtttaaaatgctcttgctttttactctgtcgtgcctcccatggga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcttgtgatccaatgtttaaaatgctcttgctttttactctgtcgtgcctcccatggga 684

                                                          
Query: 485 acgtgatggtagctgtgagtcagcctgactttcactgtcttgggttt 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acgtgatggtagctgtgagtcagcctgactttcactgtcttgggttt 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)