BAC Information

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BAC

Clone NameMSMg01-357L04
Chromosome4 (Build37)
Map Location 49,241,546 - 49,300,289
singlet/doubletdoublet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357L04.T7 (MSMg01no357_l04.b1)MSMg01-357L04.TJ (MSMg01no357_l04.g1)
ACCAG467534AG467535
length743752
length of high quality
(start - end)		540 (45 - 584)507 (75 - 581)
definitionCHROMAT_FILE: MSMg01no357_l04.b1 PHD_FILE: MSMg01no357_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:46 2005CHROMAT_FILE: MSMg01no357_l04.g1 PHD_FILE: MSMg01no357_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,241,546 - 49,242,081)(49,299,783 - 49,300,289)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTTGACCCCTCATCCTTATGAAGCAAGTGTAGCCACCAGTGGCT
ACATGAACTGGGTTCCCGAGAGGAAGGCTGGGGCTGTATGAGAGAAAGAA
TGAAAGAAGAAAGAGACCAAGACAAGTTACTGATCAAGGGCCAAAGTTTA
TCTTTTGAGTCTGAACTTAAAAGGGGGGAAGCCCATTCCCCCACCACTTC
AGGAGAACAGGTTCAGCCTCTAACCAGGTTGTGGCATCTCGGAGGAAACC
GCAGATGTAGCAGAACAATAGACTTTACCTAGGTTGGAAGACTCCACCCT
AGGTGGGCTAGGGGGCTGTGGCAAGCCAGGTCTGAGCCAGCCTGCTCAAA
GCTGGGGGAGAGTACAAACAAGTACTTTACAGACTAAGCTATTGTCCAGC
CTGTATCTCCTCTTCAAACAATATCCTTTCCACTGCCTGTACATCAGAAA
GATAGGGTCAACATTTTTACCCAGAGCAGCTGTTGGGTCCAGACGGTGGA
GATGCACATGACACAAAGGGTGATATACATTTTACAGTTGACAATGCAGT
TTTCTTAGTAGTCACAGTATTTGATTTTCCCATTCAATGAATATAAAGGA
ATGGGCCATTCCTAGTACATGTAATTTTTGGGGAGTTATTATTGCATGGG
ATTATTTCAAGCCTGACCTTTTTTCTCTTGTAACACCTTTACC

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAGTCATAGGCATTCAAATTTTTG
TAGATTTTAAAAGTGACTGAGGAAATGAGGAAAACAATATAGAGAAGTTG
CCAGCATTGTGAGAGTACCCTTTATTCTGGACTTTCAGCTTTCACAATGA
GTGCCATGTCCTCTAGATCTGCAGGGAGGCTCTGCTTCCTTTACTTCCAA
AACTTTGATTAGCTCAAGAATTACCGACTTTTGCTTTATCATACATAGAT
AGAAACAAATAATAGGCACTATCACTAGACACTTCCCGTGCCTTTTAACA
GCTCAAGTAGGCAATGCTGTTGGTATGATAGTGTTTCGAAAACCATTCAG
TGCCTCTGATAAAATACTAGCAATTGACTTCTGACCTGGTCCAAGAGCTA
CGTCTACCTGCTCAGAGAGCTGTTGAGACTCTGCATGGTGTTGTAGAAAA
GCCAAACCATATATTCCAAAAACCACGAAGTTCACTGACACCATTTGTTT
TGTTGGACAAGAAAAATGGAATCTTGAAATAGTTTCACTAAAATCCTGCT
GTCAATAAAAAACTAAAGTTCACTGTAATGTCCAGGTAATTTAACCAGTC
CAAATTTCTAGGCAAACATTTGTGACCTAAACAGACCGAAACCCAAAAAT
CCCTAAAACATCCAAATGGGCCATCTCTCCTAATATGGTCTCCAGTCTAC
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_l04.b1 MSMg01no357_l04.b1 CHROMAT_FILE:
MSMg01no357_l04.b1 PHD_FILE: MSMg01no357_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:46 2005
         (540 letters)



>mm_chr4_49241342_49242281
          Length = 940

 Score = 1013 bits (524), Expect = 0.0
 Identities = 533/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacttgacccctcatccttatgaagcaagtgtagccaccagtggctacatgaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacttgacccctcatccttatgaagcaagtgtagccaccagtggctacatgaac 264

                                                                       
Query: 65  tgggttcccgagaggaaggctggggctgtatgagagaaagaatgaaagaagaaagagacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggttcccgagaggaaggctggggctgtatgagagaaagaatgaaagaagaaagagacc 324

                                                                       
Query: 125 aagacaagttactgatcaagggccaaagtttatcttttgagtctgaacttaaaagggggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagacaagttactgatcaagggccaaagtttatcttttgagtctgaacttaaaagggggg 384

                                                                       
Query: 185 aagcccattcccccaccacttcaggagaacaggttcagcctctaaccaggttgtggcatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagcccattcccccaccacttcaggagaacaggttcagcctctaaccaggttgtggcatc 444

                                                                       
Query: 245 tcggaggaaaccgcagatgtagcagaacaatagactttacctaggttggaagactccacc 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcggaggaaaccgcagatgtggcagaacaatagactttacctaggttggaagactccacc 504

                                                                       
Query: 305 ctaggtgggctagggggctgtggcaagccaggtctgagccagcctgctcaaagctggggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 ctaggtgggctagggggctgtggcaagccaggtctgagccagcctgctcaaggctggggg 564

                                                                       
Query: 365 agagtacaaacaagtactttacagactaagctattgtccagcctgtatctcctcttcaaa 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagcacaaacaagtactttacagactaagctattgtccagcctgtatctcctcttcaaa 624

                                                                       
Query: 425 caatatcctttccactgcctgtacatcagaaagatagggtcaacatttttacccagagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caatatcctttccactgcctgtacatcagaaagatagggtcaacatttttacccagagca 684

                                                                   
Query: 485 gctgttgggtccagacggtggagatgcacatgacacaaagggtgatatacatttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctgttgggtccagacggtggagatgcacatgacacaaagggtgatatacatttta 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_l04.g1 MSMg01no357_l04.g1 CHROMAT_FILE:
MSMg01no357_l04.g1 PHD_FILE: MSMg01no357_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:46 2005
         (507 letters)



>mm_chr4_49299583_49300489
          Length = 907

 Score =  965 bits (499), Expect = 0.0
 Identities = 505/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagtcataggcattcaaatttttgtagattttaaaagtgactgaggaaatgaggaaaa 60
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 707 catagtcatagacattcaaatttttgtagattttaaaagtgaccgaggaaatgaggaaaa 648

                                                                       
Query: 61  caatatagagaagttgccagcattgtgagagtaccctttattctggactttcagctttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 caatatagagaagttgccagcattgtgagagtaccctttattctggactttcagctttca 588

                                                                       
Query: 121 caatgagtgccatgtcctctagatctgcagggaggctctgcttcctttacttccaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 caatgagtgccatgtcctctagatctgcagggaggctctgcttcctttacttccaaaact 528

                                                                       
Query: 181 ttgattagctcaagaattaccgacttttgctttatcatacatagatagaaacaaataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttgattagctcaagaattaccgacttttgctttatcatacatagatagaaacaaataata 468

                                                                       
Query: 241 ggcactatcactagacacttcccgtgccttttaacagctcaagtaggcaatgctgttggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggcactatcactagacacttcccgtgccttttaacagctcaagtaggcaatgctgttggt 408

                                                                       
Query: 301 atgatagtgtttcgaaaaccattcagtgcctctgataaaatactagcaattgacttctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atgatagtgtttcgaaaaccattcagtgcctctgataaaatactagcaattgacttctga 348

                                                                       
Query: 361 cctggtccaagagctacgtctacctgctcagagagctgttgagactctgcatggtgttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cctggtccaagagctacgtctacctgctcagagagctgttgagactctgcatggtgttgt 288

                                                                       
Query: 421 agaaaagccaaaccatatattccaaaaaccacgaagttcactgacaccatttgttttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agaaaagccaaaccatatattccaaaaaccacgaagttcactgacaccatttgttttgtt 228

                                      
Query: 481 ggacaagaaaaatggaatcttgaaata 507
           |||||||||||||||||||||||||||
Sbjct: 227 ggacaagaaaaatggaatcttgaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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