Query= MSMg01no357_l13.b1 MSMg01no357_l13.b1 CHROMAT_FILE:
MSMg01no357_l13.b1 PHD_FILE: MSMg01no357_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:47 2005
(542 letters)
>mm_chr4_52715485_52716425
Length = 941
Score = 1002 bits (518), Expect = 0.0
Identities = 536/542 (98%), Gaps = 1/542 (0%)
Strand = Plus / Plus
Query: 1 tgtttgaagaaagaatatgtttagagtctcaccttggacccaagggcaggctttaggaaa 60
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tgtttgaagaaagaatatgttcagagtctcaccttggacccaa-ggcaggctttaggaaa 259
Query: 61 gaaaaggaagttaatctgcaagaactgggcaaagtggaagtaaacctcccagggagagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaaaaggaagttaatctgcaagaactgggcaaagtggaagtaaacctcccagggagagaa 319
Query: 121 tccaaactcagcagaactgaggggctgaggggctggtgatgtagtcattgtgatgtagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tccaaactcagcagaactgaggggctgaggggctggtgatgtagtcattgtgatgtagct 379
Query: 181 tccacaaatggctaagaactgcggtggctctcctgggaatgaaaagcttgaaacaatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccacaaatggctaagaactgcggtggctctcctgggaatgaaaagcttgaaacaatgga 439
Query: 241 ataatttggaagaaaaggaaatgtgaggctacaagttatactggttcctctcatgggagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataatttggaagaaaaggaaatgtgaggctacaagttatactggttcctctcatgggagg 499
Query: 301 gaggaattgaaactgtgcataacaacaacaacaacaaaactggagatggttcagtgggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaggaattgaaactgtgcataacaacaacaacaacaaaactggagatggttcagtgggaa 559
Query: 361 aatgcttgatgtgaaagcttggggaccttacattaggtccctagtatccacataaagtca 420
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 560 aatgcttgatgtgaaagcttggggaccttacattaggtgcttagtatccacataaagtca 619
Query: 421 cacacagtagtgttcctatagaggagttttaatccagcaacataacctggctgctctagc 480
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 620 cacacagtagtgttcctatagaggaattttaatccagcaacataacatggctgctctagc 679
Query: 481 aagggatcatatccaaagacctcaatcagtatgatccagctggaatgcagataggaaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagggatcatatccaaagacctcaatcagtatgatccagctggaatgcagataggaaaga 739
Query: 541 ga 542
||
Sbjct: 740 ga 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space: 495292
Effective search space used: 495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_l13.g1 MSMg01no357_l13.g1 CHROMAT_FILE:
MSMg01no357_l13.g1 PHD_FILE: MSMg01no357_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:48 2005
(444 letters)
>mm_chr4_52896146_52896989
Length = 844
Score = 808 bits (418), Expect = 0.0
Identities = 440/450 (97%), Gaps = 6/450 (1%)
Strand = Plus / Minus
Query: 1 tttttttttctg-----ttttttttttttc-agacagggtttctctgtgtagccctggct 54
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 728 tttttttttctgtttttttttttttttttcaagacagggtttctctgtgtagccctggct 669
Query: 55 gtgctggaactcactgtatagaccagactggccttgaactcagaaatttgcctgtctcca 114
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtgctggaactcactgtataggccagactggccttgaactcagaaatttgcctgtctcca 609
Query: 115 cctcccaagtgctaggattaaaggcatgcaccaccactgcctggctcaggagaattatga 174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 608 cctcccaagtgctaggattaaaggcatgcaccaccactgcctggctaaggagaattatga 549
Query: 175 actaggacagagggagtataaagaagtcacatggaagcctgctgtcttgtaactcaaaaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actaggacagagggagtataaagaagtcacatggaagcctgctgtcttgtaactcaaaaa 489
Query: 235 tacaacagagggatcggagcgagttattctacattttgaacatgcttctcattgaagcag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tacaacagagggatcggagcgagttattctacattttgaacatgcttctcattgaagcag 429
Query: 295 agggttactgaacacagtctctagtcccaggtatggaatacctccatagaagtgggtcag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agggttactgaacacagtctctagtcccaggtatggaatacctccatagaagtgggtcag 369
Query: 355 gatgccccaggcccttgccaattcttttgcttgtccaccagaaatagaggataagacccg 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gatgccccaggcccttgccaattcttttgcttgtccaccagaaatagaggataagaccct 309
Query: 415 actggtgaagacatcactgcctttgctaca 444
||||||||||||| ||||||||||||||||
Sbjct: 308 actggtgaagacaccactgcctttgctaca 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
