Query= MSMg01no357_n02.b1 MSMg01no357_n02.b1 CHROMAT_FILE:
MSMg01no357_n02.b1 PHD_FILE: MSMg01no357_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:55 2005
(646 letters)
>mm_chr4_24965190_24966236
Length = 1047
Score = 1145 bits (592), Expect = 0.0
Identities = 628/640 (98%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctattac-tatatggaatcatggaaggccaatggaattagagcaggctcacg 62
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattctctataagatatatggaatcatggaaggccaatggaattagagcaggctcatg 263
Query: 63 tgatctagatagggacaggcagattctttgtgatatatcgtccatattcattaacagata 122
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 tgatctagatagggacaggcagattctttgtgatatatcgtccatattcaataacagata 323
Query: 123 atagtttaagtgatggtccttataattggtttattctttgagtggctttattatagccta 182
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atagtttaagtgatggtccaaataattggtttattctttgagtggctttattatagccta 383
Query: 183 tggggatctgtgaatttctggaaaaaatattttaaatatcactctgtactttaacttcaa 242
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 384 tggggatctgtgaatttctggaaaaaacattttaaatatcaatctgtactttaacttcaa 443
Query: 243 ggttccatgtctattagtttcaaagcattcattagcaaaacaataaatctttcattatag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggttccatgtctattagtttcaaagcattcattagcaaaacaataaatctttcattatag 503
Query: 303 taatttaacattgatagaagcatgtatcagctagcatgtcagattactgtcatatatcat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatttaacattgatagaagcatgtatcagctagcatgtcagattactgtcatatatcat 563
Query: 363 aaatggaaagaattcttctgtaccctgacccttataagatatacagataagtaaactttt 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 aaatggaaagaattcttctgtaccctgacccttataagatatacggataagtaaactttt 623
Query: 423 agggatcagtgaggaaagtgaaatggtggtacagatggaataaaatttttacttgttcat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agggatcagtgaggaaagtgaaatggtggtacagatggaataaaatttttacttgttcat 683
Query: 483 tcaacttgagttatttggattcagtaatcttagtacttttgaaatatttgaaagaacaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcaacttgagttatttggattcagtaatcttagtacttttgaaatatttgaaagaacaaa 743
Query: 543 atatttaaattgaataattattaatactgtcttatttaaagttactttagttgtccatga 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 744 atatttaaattgaataattattaatactgtcttatttaaagttactttagttgttcatga 803
Query: 603 cacatacagaattcaatgaaacaaaatactgatttttttt 642
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 804 cacatacagaatttaatgaaacaaaatactgatttttttt 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1047
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1037
Effective search space: 659532
Effective search space used: 659532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_n02.g1 MSMg01no357_n02.g1 CHROMAT_FILE:
MSMg01no357_n02.g1 PHD_FILE: MSMg01no357_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:55 2005
(575 letters)
>mm_chr4_25169404_25170379
Length = 976
Score = 1106 bits (572), Expect = 0.0
Identities = 575/576 (99%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 1 ttatgatggattagttcaataccgaacctctctccc-atatactctgactttctctggac 59
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 776 ttatgatggattagttcaataccgaacctctctcccaatatactctgactttctctggac 717
Query: 60 acttcctgttttgaagatttcaaaagaccagatgagtttgagcttccatgaagtcacaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 acttcctgttttgaagatttcaaaagaccagatgagtttgagcttccatgaagtcacaca 657
Query: 120 gtgtggctcatgacataacaatcggtgtcagcacctggggacccaggcagaagtccaagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gtgtggctcatgacataacaatcggtgtcagcacctggggacccaggcagaagtccaagc 597
Query: 180 acactgagagtacagaaagcaggtaacaatcctgagttattttcttcaaagccaacacta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 acactgagagtacagaaagcaggtaacaatcctgagttattttcttcaaagccaacacta 537
Query: 240 ctcagagttctcaaatttcccaagaaagaactgaagagtggcaacaaagaacacttcatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctcagagttctcaaatttcccaagaaagaactgaagagtggcaacaaagaacacttcatc 477
Query: 300 cgctgctctacaaagaactccaaaggtaagagttcccctcatcactcccagacagttcaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgctgctctacaaagaactccaaaggtaagagttcccctcatcactcccagacagttcaa 417
Query: 360 caaaattgctctgcatctctgatgtttcccaccaaaaggaggagtttggaagctcccagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caaaattgctctgcatctctgatgtttcccaccaaaaggaggagtttggaagctcccagg 357
Query: 420 aaacaaagccaaaaatggattgattaaggaaatacaaaatacatactttcagagaacatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaacaaagccaaaaatggattgattaaggaaatacaaaatacatactttcagagaacatt 297
Query: 480 ttgtttaaaatcatgaccttagttgaacttagtggaaattctcaaggatgtgtgtctgcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttgtttaaaatcatgaccttagttgaacttagtggaaattctcaaggatgtgtgtctgcc 237
Query: 540 taaatgttctatattttaaactttgtggctttgcca 575
||||||||||||||||||||||||||||||||||||
Sbjct: 236 taaatgttctatattttaaactttgtggctttgcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
