BAC Information

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BAC

Clone NameMSMg01-358A24
Chromosome4 (Build37)
Map Location 95,218,789 - 95,219,230
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358A24.T7 (MSMg01no358_a24.b1)MSMg01-358A24.TJ (MSMg01no358_a24.g1)
ACCAG467809AG467810
length7232,101
length of high quality
(start - end)		443 (39 - 481)---
definitionCHROMAT_FILE: MSMg01no358_a24.b1 PHD_FILE: MSMg01no358_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:14 2005CHROMAT_FILE: MSMg01no358_a24.g1 PHD_FILE: MSMg01no358_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAAT
ACTGGAACAAGTGAGTGGACTATGTAACCCTCATATAGCTCTTGGAAGTA
GGTAGTATCAGTCCCATTTCACAGAGGAAGACTGAAGCTGAGAACTTAAA
CCATACGACTGATAGGTTCTGGGGTTAACATTCACACCTGATTTCTATTT
TCTTTTTGATTTTTAATTTTTAATTCTGTTGCATGTTGCTAACCCTTTAC
AGTGTGCAGGTGAGAGATTGTTTTATACTTCTTGTACCTTACCAAACTCT
ATCTTCATGAAGACTTCTCCTTTAGGACTGAGTGGTCCAAAGCCTCCCAC
TCTCTGCACATTGCCCAGATGTGGTTGTTTGTGTTAGTGCCTATCTCCTT
AGGAGAAAGCTTCTCTGACAATGGCTGAGCAAGGCATTGGTCTATGTGCA
CAGCAGAATGTGACTAGGACTCATTTATTGCTATGTTCCTTTANGAGAAC
AAGATATTTGGGTTTCTGCTATGTTCATGGNCTGTCTAGNCTCAGGTTCT
TTTGGGGAGGATCCAAGGGACCTGGGGTTAGGGAAAATAATATTGGATAT
ATTGGATGAAAAAAATATTTCATTAAAATTAAAACCACCTTACGAACCCC
TTTTTTTTTTTTAAGGTTAAGAAATCAAAAACCTAAAATTGGTGCCTACT
TTTGGGGAAATAAAAAAAAAAGG

CGTTCCGGCCTATAGCTGTCATATAGGNNAGTAGGAGAGATAGTGANNNG
GNGAGATGACGTGGACAATANCACAACAACGAGGGAGNNGGGTGNNNNTN
GCNNNNGGNNNNGTNNNGGTGTATGTCTTCTGCGNATNANACACACNAAG
AGACAGNAGTNGACNGANCGAGAAGACGGCCGTCAGCAGACGGAGTACAA
CCAGCCCAGCCGCTGCTGCGCGCAAGTCGAAGAGTATAGTNGCTGCTTCA
CATGATCTATGTTATTGTATCGACGCGGCCTANCANCNACACANGCAGAG
CGTGNGCGTGNCAGTTGTGCTTANGTGTATTGTCGACGTCNTCGTCCCTG
CTCTCGTTCAGTGTCTCGTGTTGAGTGATGATTCTGATNTGGTGTAGTGA
TGTATCGTGAGATAGTCTAGTCTATCTATACGTAATGTATCTACGANTAT
TAAGACACTACTGAGANCTGGCATGTCTGGAGTACTATGTACGTCTGTAT
AGTCGTTCGTGTCGTCGCACTACNCATCATCTATNAATTCACCGGTAGTA
TGACGTACCAGAGCGNCGCCNGCAGAGCGGTCCNGTAGGCGCAGCCTATC
GCGGTCGCGCTCGGACTGCTGCTTTGCTCGTATGTTCGTCTGCTAATACT
GCAGCTCGNGCGNCGTCTCTAGNACNTAGAGCACGCNTCAGGATGTCAGT
AGTCGTCAGATGNCGTGTGNCTCACAGTCGGTGATGCATGACTGTATGTT
GTGATGCTTAGTATGTCAACGTGAGCGCCGATCAGATGCATCGACGCCTG
TCTCANGCTGTTGCGTGCTGANATCTGTGTGTTGTCTATCTTGTGTGCTG
TGAGCTANCTGTCNTGACNAGCTCTCGCTGGGACTAGGNCGACGCTAGTC
GTCTACTACGACTCGAGCACGCNTGCCNATATCTATAGTCGATATGATGA
TAAGCTGTACGTCGCTATCGTTCNATGTNCGCGGAATCGTGCTGTGNTTN
CGTCACTCCTCAGACATTGACGTGTGCGCANTGCCGTGGACTGCTTGATG
TCCNTTGANTACGTCTGTCTGCGTCAGANGATGGATGCGTGCTGTATGAG
ATGNGTGATGATGCTGATCAGCCCAACNGCATACTACACNCTNCCNAAAA
CCCGCNACTGCACACGNCACNAACTAGACGCATAGATATANGAGAGCTGC
TGTGCATGGNGCANCATAATTGTGCATCGTACCGTGACNTCTGATACTAA
TTACTCAAATTATACGCACNACNCNANNACCAGTAGGTGACTACTACTAC
GATCANATGATGCATAANCATAATCNTAAGTAGCNATCGTACAAAGCTCG
CTGTCNGACTAGCTACGCGATGNAGCATNCTAGTAGCTGNCATCTANTGA
GTATATCTCACCAGACTACTCATTNGCATGTTGTCTNGTCGNTGATCCGC
CNATCTAGCACGACCTATCAGTGCNGTAGATCTGTCGTCGAGCATGTGAG
TCGCGATGCGCTGGANCGNCTGNTATCGCTACATGTGTGCTCTCGTGATG
CAGTATGTCGTGTTGGTACGTATGATGGNTGACGCGCGCAATGATAGGAN
AGATGNTGATGTTTGGGGCGTATAGCTGTTCGACTACATCTCGACGNTCA
GTGANCATAGCNACTATACGNGAANGACGCGATCGACGCGATCGCACTGC
GCTGTTCTANTGTGTAGTGATGCTCGTACGTGTACATGCAGTGCNTGTGA
CGNCATGCTCAGTCGTCGTCTCCAGACGTCGTCGACTAGTTCGCGACATC
GCAGCANCGTGCTATNNCATGTTTGACTTCGCATAGGATCGTCAGNAGTN
CTNATGAGGNTACGCNGAATATACTACTACNCTNCTTAGCNATGCTTACG
TACTGCTGCTCNACTAGTGCCATACTGCATGACGAGACTAGTAGCTAANG
TACGACAGNNACTAGATGCGCTGCTGCACGACTGATGCTGCTGTAAACTG
GTGATNCANCTACCGCGACTGTCTGCTAGGTAGCGNNATGATCTAGACTG
ATNGCTGNACTGCNTAGCGACGCTANTCACTGGTNCTGCNTCTGATGCCN
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_a24.b1 MSMg01no358_a24.b1 CHROMAT_FILE:
MSMg01no358_a24.b1 PHD_FILE: MSMg01no358_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:14 2005
         (443 letters)



>mm_chr4_95218588_95219430
          Length = 843

 Score =  812 bits (420), Expect = 0.0
 Identities = 436/442 (98%), Gaps = 3/442 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaatt-aatactggaacaagtgagtggactatgtaaccctcatatagctcttggaagtag 63
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 202 gaattcaatactggaacaagtgagtggactatgtaaccctcgtatagctcttggaagtag 261

                                                                       
Query: 64  gtagtatcagtcccatttcacagaggaagac--tgaagctgagaacttaaaccatacgac 121
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 262 gtagtatcagtcccatttcacagaggaagacactgaagctgagaacttaaaccatacgac 321

                                                                       
Query: 122 tgataggttctggggttaacattcacacctgatttctattttctttttgatttttaattt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgataggttctggggttaacattcacacctgatttctattttctttttgatttttaattt 381

                                                                       
Query: 182 ttaattctgttgcatgttgctaaccctttacagtgtgcaggtgagagattgttttatact 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttaattctgttgcatgttgctaaccctttacagtgtgcaggtgagagattgttttatact 441

                                                                       
Query: 242 tcttgtaccttaccaaactctatcttcatgaagacttctcctttaggactgagtggtcca 301
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttgtaccttaccaaactccatcttcatgaagacttctcctttaggactgagtggtcca 501

                                                                       
Query: 302 aagcctcccactctctgcacattgcccagatgtggttgtttgtgttagtgcctatctcct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagcctcccactctctgcacattgcccagatgtggttgtttgtgttagtgcctatctcct 561

                                                                       
Query: 362 taggagaaagcttctctgacaatggctgagcaaggcattggtctatgtgcacagcagaat 421
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taggagaaggcttctctgacaatggctgagcaaggcattggtctatgtgcacagcagaat 621

                                 
Query: 422 gtgactaggactcatttattgc 443
           ||||||||||||||||||||||
Sbjct: 622 gtgactaggactcatttattgc 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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