Query= MSMg01no358_e08.b1 MSMg01no358_e08.b1 CHROMAT_FILE:
MSMg01no358_e08.b1 PHD_FILE: MSMg01no358_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:29 2005
(551 letters)
>mm_chr4_56437295_56438245
Length = 951
Score = 1021 bits (528), Expect = 0.0
Identities = 543/548 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaactcccattagttctgtaggcaacagcacttacgcacaaaccctcacaaggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggaattcaactcccattagttctgtaggcaacagcacttacgcacaaaccctcacaaggt 692
Query: 64 aaacacatagttgctgggtttggaaagtcttttaaaaagattcccatttttgtaagtgca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaacacatagttgctgggtttggaaagtcttttaaaaagattcccatttttgtaagtgca 632
Query: 124 gcctctttttagtgccatccaggatgggatgggaggagtctggagaagcaggcagtgccc 183
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gcctttttttagtgccatccaggatgggatgggaggagtctggagaagcaggcagtgccc 572
Query: 184 atatgtattgacttgcccccatggtgattttgatacctttctgcatacggccagctctga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atatgtattgacttgcccccatggtgattttgatacctttctgcatacggccagctctga 512
Query: 244 gtactgtagctccctccatctcatttctgcattctaagcatcctgacctatactgccttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtactgtagctccctccatctcatttctgcattctaagcatcctgacctatactgccttc 452
Query: 304 attgctacctccctgtagtcatgaccactcagtgattacatcttcaattcagcaggatgg 363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 attgctacctccctgtaggcatgaccactcagtgattacatcttcaattcagcaggatgg 392
Query: 364 gttcatgtttaaagagagatggatagagggtactcatgcgatcgtgagttgggaagtggt 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 391 gttcatgtttaaagagagatggatagagggtgctcatgcgatcgtgagttgggaagtggt 332
Query: 424 tttctttccttaaatgcttgctgtgacggtgtcctgctgaaaccacatagatagaacttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttctttccttaaatgcttgctgtgacggtgtcctgctgaaaccacatagatagaacttt 272
Query: 484 ctgcagctgggccttgattttcaatgtagcttcttgtctccttcttcattatagcttaag 543
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 271 ctgcagctgggccttgattttcaatgtagcttcttgtttccttcttcattacagcttaag 212
Query: 544 ttctattg 551
||||||||
Sbjct: 211 ttctattg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_e08.g1 MSMg01no358_e08.g1 CHROMAT_FILE:
MSMg01no358_e08.g1 PHD_FILE: MSMg01no358_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:29 2005
(512 letters)
>mm_chr4_56299645_56300555
Length = 911
Score = 975 bits (504), Expect = 0.0
Identities = 510/512 (99%), Gaps = 1/512 (0%)
Strand = Plus / Plus
Query: 1 ttcccagatcagacactgggggagtaaaataaaagttgtcagaatggatagatatttaaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccagatcagacactgggg-agtaaaataaaagttgtcagaatggatagatatttaaa 259
Query: 61 ggagatataactcagtgcccattttattgatagagaaccctctatctgcagaattcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggagatataactcagtgcccattttattgatagagaaccctctatctgcagaattcagtc 319
Query: 121 tccaaagtctcacggtagttaagagttcaaagttggatgtaaatttcactttctatcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tccaaagtctcacggtagttaagagttcaaagttggatgtaaatttcactttctatcctc 379
Query: 181 actggaagttctgaaactctgttttgatgtctcttgccattgccctgtttgcaacaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actggaagttctgaaactctgttttgatgtctcttgccattgccctgtttgcaacaagaa 439
Query: 241 gaaagaattagaagtaagctgccacacagttgtctatccccaaatatgaattgtgttttt 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaagaattagaagtaacctgccacacagttgtctatccccaaatatgaattgtgttttt 499
Query: 301 caagtcaaatgttatagaccatctgcactgtacctcctgaaacacactaaccctggaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caagtcaaatgttatagaccatctgcactgtacctcctgaaacacactaaccctggaaat 559
Query: 361 tttgtctactttcaatgaccctacatgaagcacttgccttttaagatactagccttggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgtctactttcaatgaccctacatgaagcacttgccttttaagatactagccttggat 619
Query: 421 atggccttgaacactggaatttctgcacttggcagggaaacatttagcaaagaacagaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atggccttgaacactggaatttctgcacttggcagggaaacatttagcaaagaacagaac 679
Query: 481 atactttttttttcttgttttaacttgacttc 512
||||||||||||||||||||||||||||||||
Sbjct: 680 atactttttttttcttgttttaacttgacttc 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
