XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGA
TTTGACCTTGCTCCACTTCACCAGCCCCATACCCATTCCTCTGGTACCAT
GATCCACATGCCATATACCACTCCAAATAGAAGAACTAAAGTATTTTGGT
ACCCCTGGCCCGTTTGAGTGAGCATAATTCATAATACACACAATAAAGTC
TACTCCATTAGCATCATTTGAAAAATTCCTTTAAAAAACCTCCTGACACT
TCAGACAATCATATGTCCCTTATTTCTCTAACACCTATTCAACCTGGATC
TCACATATTCTAGAAAACTCTGATGACCAATAGGTGACAAAGTGCTCCCC
AACATAAAGCCTAAAATTAACACTTCTCTCTCCCTCTCCTTCCCCCCTCT
CTCCCTCTCTCTACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCCC
CACCCCCTTGGCCTTGTCCCTCCCTGGCACCCTTCTTGACCANANNCTGT
CTCTGTANACANTAAATTTTATACTACACCTTCTGAGTGGGATCTACACT
AAACCTAACTTCTCCATTGAAATTTTCAAAACCTTATTTTTTGTCCCTTC
TCCCCCAAAAAAAGGGCCCCGGGGTTTTTTTGAACCTGAACCCGGTTTTT
TGTAAAATAAAGAACCCCTTTCTT

GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCATTCCTCCTTAGAATAGGGAACAAAAAACCCAT
GAAAGGAGTCACAGAGACAAAGTTTGGAGCTATGACGAAAGGATGGACTA
TTCAGAGAGTACCTCACCTGGGGATCCATCCCATAATCAGCCACCAAACC
CAGACACTATTGCATATGCCAGCACAATTTTGCTGAAGGGACTCTGCTAT
AGCTTTCTTATATGTGGTTATGCCAGTGCCTGGCAAATACAGAAGTGGAT
GCTCACAGTCATCTAAAGGCTGGAACACAGGGCCCCCAACGAAGAAGCTA
GAGAAAGCACCCAAGGAGCTGAAGGGGTTTGTAACCCTATAGGTGGAACA
ACAATATGAACTAACTAGTACCCCAGAGCTCGTGTCTCTGGCTGCATATG
TAGTAGAAGATGGCCTATTCGGCCATCATTGGGAAGAGAGTCCCTTTGTA
TTGCAAACTTTATATGTCCCAGTACAGATGAACGCCAGCGTCAGGAATTG
GGAGTGGGTGTGGTAGGATAACAAGTCAACTATAAGTCTCTATCCATTTC
TCTCATACCCCCTTATCGTACCTTTTACTATCTTACTTCATCCCTTTTCG
TTTTTCACGTGATTCTTTACTTTAATTTCCTTCTTATTACTTATACGTTC
ATAACACATATCATATCTTGCTATTATTAGANNNNNN

Query= MSMg01no358_n19.b1 MSMg01no358_n19.b1 CHROMAT_FILE:
MSMg01no358_n19.b1 PHD_FILE: MSMg01no358_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:14 2005
         (477 letters)



>mm_chr4_121311918_121312795
          Length = 878

 Score =  793 bits (410), Expect = 0.0
 Identities = 429/436 (98%), Gaps = 3/436 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggatttgaccttgctccacttcaccagccccatacccattcctctggtacca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggatttgaccttgctccacttcaccagccccatacccattcctctggtacca 264

                                                                       
Query: 65  tgatccacatgccatataccactccaaatagaagaactaaagta-ttttggtacccctgg 123
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 tgatccacatgccatataccactccaaatagaagaactaaagtatttttggtacccctgg 324

                                                                       
Query: 124 cccgtttgagtgagcataattcataatacacacaataaagtctactccattagcatcatt 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgtttgagtgagcataattcataatacacacaataaagtctactccattagcatcatt 384

                                                                       
Query: 184 tgaaaaattcctttaaaaaacctcctgacacttcagacaatcatatgtcccttatttctc 243
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 tgaaaaattcctttaaaaaacctcctgacacttcagataatcatatgtcccttatttctc 444

                                                                       
Query: 244 taacacctattcaacctggatctcacatattctagaaaactctgatgaccaataggtgac 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacacctattcaacctgaatctcacatattctagaaaactctgatgaccaataggtgac 504

                                                                       
Query: 304 aaagtgctccccaacataaagcctaaaattaacacttctctctccctctccttcccccct 363
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aaagtgctccccaacataaagcctaaacttaacacttctctctccctctccttcccccct 564

                                                                       
Query: 364 ctctccctctctctacttctctctctctctctctctctctctctctctctctctctctct 423
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctc--cctctctctacttctctctctctctctctctctctctctctctctctctctctct 622

                           
Query: 424 ctctctctctctctct 439
           ||||||||||||||||
Sbjct: 623 ctctctctctctctct 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 878
Length adjustment: 10
Effective length of query: 467
Effective length of database: 868
Effective search space:   405356
Effective search space used:   405356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)