BAC Information

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BAC

Clone NameMSMg01-358P13
Chromosome4 (Build37)
Map Location 18,835,505 - 18,835,966
singlet/doubletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P13.T7 (MSMg01no358_p13.b1)MSMg01-358P13.TJ (MSMg01no358_p13.g1)
ACCAG468499AG468500
length6921,439
length of high quality
(start - end)
517 (38 - 554)---
definitionCHROMAT_FILE: MSMg01no358_p13.b1 PHD_FILE: MSMg01no358_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:22 2005CHROMAT_FILE: MSMg01no358_p13.g1 PHD_FILE: MSMg01no358_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCAA
TGATATATCTCTTCTCCTTTGGATATTATACCATTAGAATCCTGATATAG
TAATTATGTCTTACTGTATCTTAGAGGTACATTTAAAATCATATTTATTT
AGTACAGATCCAGTTTTCTAAAAATAGTTTCTCAGAGTGACTATTAGCTA
TTGCTTTTGAATGTTTTGGATATGTTACAATAGAAAAAAAAACCAATTTT
TATCACCATTCAAGATACACATATATAAAGATACAAGGCCAAAAGCACAT
GCATTAATTACTTTTCTGTCGCTGTAATAATGGACCATGATCAAGACAAC
TTATAAATCGAATGTATTATTGAATTTATGTGTCCAGATTTGAAGAGCTC
ATGATGGTAGAGTGAAGCACCTTGGAAGGAAAAGCTGAGAGCTCACACCA
GAAGAGGGAGGATTAGTCAGCACACTTGGTGATACTAGGGGACTTTTGAA
ACCTCAAATCTGCTCTCAGTGTCTCACCTTCAGACCACACCTTCTAATCC
TTCTTAAAACAGATACTCACTAGGGACCAAGTATTGAAATATATGAGCCT
ATTAGATCCATTTTTAATCCAAATACTATAGCACATGAAGTCTTAAGTGA
AATTATTATTGAAAAAAATCTACTCATGTGGTGTGTGACCCG
CCAGAGACAGAGTGGCGACGATACCCAGCGTCTGGTGGGCTCTCTTATCC
ACTCTATGTGGTATGATTATTATTAACAGAAGAGTACTTGACGNAGTAGG
TAGAAGAGTATACCCGCGATCTCACATCACATAACTAGCCAATAGACCTC
CCTCTCCTCGCCACCCTTTATCCGTGTTCGTCGTGCTAATATTCTGTCAT
ATCTTAGCTTTCTCTATCTACCTTGGGTGGATGTGGGAGTTGGAGGCGGA
CGATAGACGAGTCTTATACGAGTAGAGACCTCGAAGATCCGCTCATCGCA
CGCATGTTGTTGTCGTATGTCTACGCTTATACATATATAGGCTATCCGTC
CACACAGTAACCACATACATTCTAACCCTCTACTCCACTCTAACAATCTT
ATCTTATCTACATGGTAGTGTGATAACGTGTGTTGAGTTGGTGTGCCAGA
CGCGCTGTTGTATTGATGTGCATAGAGTGCTATCCTCTGCACTGCCAGCG
TCGCAGATACGTCCGTCTCGCCCGATATTTATCATATTTATTATGACTTA
AAATAAAAAACTAGAAAGTAGAAGACATGGATATAGTTTGCGTGTTNTAG
TGACGCTATGATGGTAGTCCTTCTATACATAACCGAACAAGATATAGCTA
TGTGCGGTATGATCTGTGTGACGTGTAGATCTAGCGACGAGCACTGCCGA
TGGCCGCGACCCGAAAGCACGCACCTNTCATATCTCCACCGCTCTAATCA
CCCGCCACGATGTGACACAATCCGGTATTGCTGTATATCACAGTTGCGGC
TGTCACAGCTTGTACATGACATTGACATAGCATGACNAACAAGACCGCCA
GCACGCGGATGGATANGAGNAACGAAATACGNTAGCTACGTTAGTAGTCT
GTTACCGAACTACCATAGCCGATTATATCGACCGTATAATAGATACGTGA
GCGACTTACCATNTGTAGATCAGTTATTTGTGNCATATATACGCGGTGTG
TGATTCTCGTAATTAGTGCTGGCCAGCGTAGCCGATGTAACTAGAGGTAC
GTGAAATATACATCTATGTGGAACAAGCACGATATATCTGACTAACACAG
TATCCATATGTCGCAGCGGTGAGTGCGAGNACGCTTTACACAATGNATAC
GATCACCGACTGACGCGACGACTGGACGTCNAACACGTCACGTAGTGTAC
GCGTATNTTTGCAGTTAGANTCATCTACTCTTAACAACCGATAGTATTAT
ACTATNTCTGATTCTGATACGTGATACCATGCATGATCCANATCTGCTGC
ACGTACGATATGTGTTCGCACTGTCGCTCGTGTGACGTCGAGCGTATTAG
AGCACCTGTAGATTCTCGTACGTGTCATGTGTGCATCGATGTGATACATG
CATATGGAGCAGATGATCGCATAACGATATGTATNTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p13.b1 MSMg01no358_p13.b1 CHROMAT_FILE:
MSMg01no358_p13.b1 PHD_FILE: MSMg01no358_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:22 2005
         (517 letters)



>mm_chr4_18835505_18836421
          Length = 917

 Score =  816 bits (422), Expect = 0.0
 Identities = 452/462 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaatgatatatctcttctcctttggatattataccattagaatcctgatatagta 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcaatgatatatatcttctcctttggatattataccattagaatcctgatatagta 403

                                                                       
Query: 66  attatgtcttactgtatcttagaggtacatttaaaatcatatttatttagtacagatcca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attatgtcttactgtatcttagaggtacatttaaaatcatatttatttagtacagatcca 343

                                                                       
Query: 126 gttttctaaaaatagtttctcagagtgactattagctattgcttttgaatgttttggata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gttttctaaaaatagtttctcagagtgactattagctattgcttttgaatgttttggata 283

                                                                       
Query: 186 tgttacaatagaaaaaaaaaccaatttttatcaccattcaagatacacatatataaagat 245
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 282 tgttacaatagaaaaaaaacccaattttgatcaccattcaagatacacatatataaagat 223

                                                                       
Query: 246 acaaggccaaaagcacatgcattaattacttttctgtcgctgtaataatggaccatgatc 305
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ataaggccaaaagcacatgcattaattacttttctgtcgctgtaataatggaccatgatc 163

                                                                       
Query: 306 aagacaacttataaatcgaatgtattattgaatttatgtgtccagatttgaagagctcat 365
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 162 aagacaacttataaatagaatatattattgaatttatgtgtccagatttgaagagttcat 103

                                                                       
Query: 366 gatggtagagtgaagcaccttggaaggaaaagctgagagctcacaccagaagagggagga 425
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 102 gatggtagagtgaagcatcttggaaggaaacgctgagagctcacaccagaagagggagga 43

                                                     
Query: 426 ttagtcagcacacttggtgatactaggggacttttgaaacct 467
           ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ttattcagcacacttggtgatactaggggacttttgaaacct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)