BAC Information

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BAC

Clone NameMSMg01-359H23
Chromosome4 (Build37)
Map Location 28,783,525 - 28,783,865
singlet/doubletsinglet
Overlap geneEpha7
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneLOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359H23.T7 (MSMg01no359_h23.b1)MSMg01-359H23.TJ (MSMg01no359_h23.g1)
ACCAG468898AG468899
length793786
length of high quality
(start - end)
385 (24 - 408)341 (55 - 395)
definitionCHROMAT_FILE: MSMg01no359_h23.b1 PHD_FILE: MSMg01no359_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:00 2005CHROMAT_FILE: MSMg01no359_h23.g1 PHD_FILE: MSMg01no359_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGAAATTCCTAGGCAA
ATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAA
AGAACTCAAATGAAATGTACTCACTGATAAGTGGATATTAACCCAGAAAC
TTAGTATAGCAAGATATAAGGTACAATATGTAAAACATATGAAACTGAAG
AAGAACGAAGACCAAAGTGTGGACACTTTGCTCATTCTTAGAATTGGAAA
CAATCACCCATGGAAGGAGTTACAGATACAAAGTTTGGAGCTGAGACAAA
AGGATGGTCCATCTAGAGACTGACATATCCAGGGATCCATCCCATAATTA
GCCTCCAAATGATGACACCATTGCATACACTAGCAAGCCTCTGTTGCAAG
GACGGTGATATAGCTGTCCCTTGTGAGACTAGGCCGGGGCCTATCAAACA
CACAAGTGGATGCTCCCCGCCCACTATTGGGATGGATCACAGTGTCCCCC
CTTGGAGTAATTCTAGCATAGTTTTCTATGATCTTTACGAAAATTTGCCA
TCCTTATTGGATGTGCACCCCATTTTGACTTTCCCATTTCTCTCGAACCC
CCGATTCCTTTTTCTCAGGTCTCTTTTTTTATTTTTTCCCCCCTCCCCTT
TCCATTAATTTTTTTTCCGCTCCTATCTACCGCCCCCCTTTTTTTTTCTG
CCTTATCTCCTCCCATTTTCTTTTTTCCTCCCTCTTTTTTTTCTCCCTTT
TTTCCCCCCTTCCACTTTTCCTATTTTCCCCCCCTTCTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCAAACTGTAGACGTTAAAGGACTATGTCTAGACGTGATGTCAA
TAAAGGTTGCTAAGTTCTTTGATTTCCAGACTTAAATTCTTCTTTTTATA
TAAACAGCATCCAGTGTTATAAAATATTTCACAAAGCTAGAGTTCAGAGA
AAATAGTGTCATACAAATAAGATGGATTGTTTCTGTTATCTGCATGAAAC
ACTGGCCTTATATGATGTACATCTAAGTTACTAAGTTACTCAACTCTCAT
GAAGGTTTTCCCGACTTTTAAAGTTTTCTGTTCACTCATGAAAGTATCCA
TGCACCTAACTGCATAGCCCTGTTTTTTAAGCTCTAATAACCTAAGTGTT
ATATGTATGGTTAGCTGAATATTCTTCTTTCCCCAAAGAAAGAGAGACTC
TCCGATATTTATTGACCCCGATCCCCTGATACCTACTGAGACCGATCTTG
CGTTTGTCACCAAAATGTTAGTCTTTTATCTTTTTAACAACTTTTGCACC
TTCTTATATTTCCCTTTTCTTTCTCCCCTTTCACTATCTTTTTTTTTCCC
CCCCCCCTTTCTACATTACAATCCTTCTTTTTTTTTCCCCCCCTATTTTC
TTCTTTTTTCATTCTCTTCTTTCTCCCTTCTTCTTTTTTTGCTTTTTTTC
CCCGTTCTCATTTCTTTTTTATTTCATGTTCTTTTCCCCACCTTTTTTCC
TCACTCCTCTATTTCGCCTTTCTCTTTTCGCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_h23.g1 MSMg01no359_h23.g1 CHROMAT_FILE:
MSMg01no359_h23.g1 PHD_FILE: MSMg01no359_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:00 2005
         (341 letters)



>mm_chr4_28783325_28784065
          Length = 741

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaaactgtagacgttaaaggactatgtctagacgtgatgtcaataaaggttgctaag 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 541 tttcaaactgtagacgttaaaggactatgtctagacatgatgtcaataaaggttgctaag 482

                                                                       
Query: 61  ttctttgatttccagacttaaattcttctttttatataaacagcatccagtgttataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttctttgatttccagacttaaattcttctttttatataaacagcatccagtgttataaaa 422

                                                                       
Query: 121 tatttcacaaagctagagttcagagaaaatagtgtcatacaaataagatggattgtttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatttcacaaagctagagttcagagaaaatagtgtcatacaaataagatggattgtttct 362

                                                                       
Query: 181 gttatctgcatgaaacactggccttatatgatgtacatctaagttactaagttactcaac 240
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 361 gttatctgcatgaaacagtggccttatatgatgttcatctaagttactaagttactcaac 302

                                                                       
Query: 241 tctcatgaaggttttcccgacttttaaagttttctgttcactcatgaaagtatccatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctcatgaaggttttcccgacttttaaagttttctgttcactcatgaaagtatccatgca 242

                                                    
Query: 301 cctaactgcatagccctgttttttaagctctaataacctaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctaactgcatagccctgttttttaagctctaataacctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)