BAC Information

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BAC

Clone NameMSMg01-359N05
Chromosome4 (Build37)
Map Location 105,899,851 - 106,098,651
singlet/doubletdoublet
Overlap geneUsp24
Upstream genePpap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
Downstream geneLOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359N05.T7 (MSMg01no359_n05.b1)MSMg01-359N05.TJ (MSMg01no359_n05.g1)
ACCAG469148AG469149
length780766
length of high quality
(start - end)		349 (48 - 396)405 (59 - 463)
definitionCHROMAT_FILE: MSMg01no359_n05.b1 PHD_FILE: MSMg01no359_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:24 2005CHROMAT_FILE: MSMg01no359_n05.g1 PHD_FILE: MSMg01no359_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,899,851 - 105,900,199)(106,098,350 - 106,098,651)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATACTCATTTCT
GATGCCAATAAGTTTGACCAGTGAGGCTGCTGCTTAGTGTCACATGTCCA
TAACTTCAGGAAGCAGATCCCATTTCCGCGCACCCGTCAGTCACAGCATT
AGCAAGATGACCTGTCCACTTAGGGACCTCCGTACTAAGGCAAAAGTCGC
CTGGCCACCATTCACTGGTGAACTTATGCAGGTGGGTTACATGCCTCCTC
TGTCTGGGTTTCGTGCTCGTAAGTCATTCTTGCAATATGCCATTCCTGCA
AGAAGCCAGGAAAAGCCCTCTGAAGGGTGCTCCTGCTCTCCGAAGCATCG
TTAGCATGTACATTCCCTCGTCCAGCAGGGCAGTAATGTGCTACTGGCAC
TGGCATAATTGAAGACGAAACTACCGGACATGGAGCGGGGGAAACACTAC
TTCTTAGCCTAGCCAACAGCACCCCCCAGTGCCAAGGAAAAGGAAGGGGG
CCAAAAAAGTAATACAGCCACAAGTTTTCCCATGTGGATATCGCAAAATT
CTTAAATAACCTTCTGTGAAAAACCTCCCCCATTTTATTAAACCCTTTTT
TCTTCTTTTTCCATTTTCCGTTTCCCTTTTCTTTTATTAACAGTTTTCTT
TTTCNCCTCCAATTTTTTTCTTTTTCGCCACAATTCATCCCTCATTCTTC
TTCTCTCCCCTCTATATACTTCACCCCTTTTCTTCTCCATTTTCTTCTTC
CCCCCTTTTTTCTCCCCCCCTTTTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATAGGAAGGTAACTATGGGTGGGACAAGAGCTGGCTGGAGAT
GAGACACAGTGTATGCCCTGTGCAGGCATGGGAACAGTCCACAAGCACAT
TGTTTTTTTTAATTAAAAATTTTTTTAATTTACATTTCATATGCTATCCC
CTTCCCGGTTTCCCCTCTGCAACCCCCTACCCCATCCTCCTTCCCTCCCT
GTTTCTATGAGGGGGTTTCCCCACCCACCTAACCACTCCCAACCCCCCTG
CCCTAGCATTCCCCTATGCTGGGCCATCGAGCCTCCACAGGACCAAGGGC
CTCCCCTCCCAACACATTTCTAAGGTTCACACACACATGCTTCTAGGCGG
CAGGGTTTTAGGTCCAAGGAGAGATAGACCAGCGACAAAATCTTTTGATA
ATGAAGTACTTTACATGTGAACTGTCACTCACCTTCTCTGGGACCTTAAG
GAAAGTTCTTGGTTGAAGAAGATGATTAACATCCACTTAACAAATTTATC
CATCATCCATCTACTCAGCCACCCATCTACACATATATACAGGGAGTGAG
CCCGCTTAATAATGGCCCCCCCTTTATTTACGCCCCCACCTTTAACTTTC
CTAAAAGGGGTTAAAATAAAAAAAACCCCCTTCCCCAAAAAAAATTTTCT
CCTCCCCCCAATCCCTTGAATTTATGCCCTCACCAATACGGATTGGCTTT
CACTTGACCCAAACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_n05.b1 MSMg01no359_n05.b1 CHROMAT_FILE:
MSMg01no359_n05.b1 PHD_FILE: MSMg01no359_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:24 2005
         (349 letters)



>mm_chr4_105899651_105900399
          Length = 749

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/349 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgccaataagtttgaccagtgaggctgctgcttagtgtcacatgtccataacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgccaataagtttgaccagtgaggctgctgcttagtgtcacatgtccataacttc 260

                                                                       
Query: 61  aggaagcagatcccatttccgcgcacccgtcagtcacagcattagcaagatgacctgtcc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagcagatcccatttccgcacacccgtcagtcacagcattagcaagatgacctgtcc 320

                                                                       
Query: 121 acttagggacctccgtactaaggcaaaagtcgcctggccaccattcactggtgaacttat 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 acttagggacctccgtactaaggcaaaggtcgcctggccaccattcactggtgaacttat 380

                                                                       
Query: 181 gcaggtgggttacatgcctcctctgtctgggtttcgtgctcgtaagtcattcttgcaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggtgggttacatgcctcctctgtctgggtttcgtgctcgtaagtcattcttgcaata 440

                                                                       
Query: 241 tgccattcctgcaagaagccaggaaaagccctctgaagggtgctcctgctctccgaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccattcctgcaagaagccaggaaaagccctctgaagggtgctcctgctctccgaagca 500

                                                            
Query: 301 tcgttagcatgtacattccctcgtccagcagggcagtaatgtgctactg 349
           ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tcgttagcatgtacattccctcgtccagcagggaagtaatgtgctactg 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_n05.g1 MSMg01no359_n05.g1 CHROMAT_FILE:
MSMg01no359_n05.g1 PHD_FILE: MSMg01no359_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:24 2005
         (405 letters)



>mm_chr4_106097847_106098651
          Length = 805

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%), Gaps = 1/302 (0%)
 Strand = Plus / Minus

                                                                       
Query: 105 ttaaaaatttttttaatttacatttcatatgctat-ccccttcccggtttcccctctgca 163
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 805 ttaaaaaattttttaatttacatttcatatgctatcccccttcccggtttcccctctgca 746

                                                                       
Query: 164 accccctaccccatcctccttccctccctgtttctatgagggggtttccccacccaccta 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 accccctaccccatcctccttccctccctgtttctatgagggggtttccccacccaccta 686

                                                                       
Query: 224 accactcccaacccccctgccctagcattcccctatgctgggccatcgagcctccacagg 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accactcccaacccccctgccctagcattcccctatgctgggccatcgagcctccacagg 626

                                                                       
Query: 284 accaagggcctcccctcccaacacatttctaaggttcacacacacatgcttctaggcggc 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accaagggcctcccctcccaacacatttctaaggttcacacacacatgcttctaggcggc 566

                                                                       
Query: 344 agggttttaggtccaaggagagatagaccagcgacaaaatcttttgataatgaagtactt 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggttttaggtccaaggagagatagaccagcgacaaaatcttttgataatgaagtactt 506

             
Query: 404 ta 405
           ||
Sbjct: 505 ta 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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