BAC Information

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BAC

Clone NameMSMg01-359O16
Chromosome4 (Build37)
Map Location 111,256,352 - 111,256,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040381, 2310026E23Rik
Downstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359O16.T7 (MSMg01no359_o16.b1)MSMg01-359O16.TJ (MSMg01no359_o16.g1)
ACCAG469217AG469218
length776777
length of high quality
(start - end)		491 (46 - 536)337 (57 - 393)
definitionCHROMAT_FILE: MSMg01no359_o16.b1 PHD_FILE: MSMg01no359_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:31 2005CHROMAT_FILE: MSMg01no359_o16.g1 PHD_FILE: MSMg01no359_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGACTCAAGTGATC
CAATGTCCTCATCTGGCCTCCATAGGCCCTGCATACATGTAGTTTACAGA
CATAGCCACAGGCAAAACATCCACAGACAAATAATAATAACTTTACATGG
TCATAAGATTTGAATAAACATTATTCCAGAAGAGATACGCATGTCATTGA
TACATATATAAAGTTTTACCACATCACTAACAATTAGGAAAATTTAAATC
AAAACTAACATGCTCTCACACCCATTAAGAGGCTTGTGCAGTAGATGAGG
ATATAAAATGGTATACTTGCTATGGAAACACTGATTCCTCCAAAAATGCT
AAAGCAATATACAAAGGAGAACTGAAAGTGCTCAGATATTTGAGCACTAA
TGTTCATAGCAAGATTATTCACAATAGTGAAATGCTAGAAACAAACCAAG
TATCCATCAACAAAGAAACAGGTGAATGTTTTATAAACATCTAATAGCAT
ATCACTTGTCCTTATTAAGGAAGGGACTTTTGGCGCTCAATTTCATGATC
CCTGAAGGATCCATGTGAAAAAAGTTAGGTCCCCAAAAGGAAAATACCAA
TTTCCCTTGATAAAAAATTTTTCTTAATGATTCCTATAACCAAGATCAAT
ACCCCCATTACGGCGATAAAACGTACTGGTTTTTGCGGCCGTTTTTCAAA
ATTTTCCTACAATCTCAAAAAACGTCTTGTTACCCTCGCTCCCCCCCTTT
TTTATCTCTCTTGGATCCACTCATTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGGAGAGTCTGACTTCAGTCACGTAGAAGCCCATCTTGAATTCA
TGAATGCCGAAGCTGTTCCCTTCACTCCCTCTCTCTTACTGTTATCTGTT
CTCTATACCTTGGCGTCTCAGTTAGAGAAGCTTTGGTCCCCATTCTACCC
GAGTCATGGTTAAACCGCTGTGAGCTGTAAAGGAGGCTCTGGGCATGGTC
TGACACCCCAGTTTACTTCCAAGTCAACTCTTCTCATTAGCTTGCGCTAT
TCATTTCACCCCTCCCACACGCTTCCCCTTCTGTGTCCTTGGCTCCACAG
AATGAGGTCTGTGTATACAGCGTGCTACTTACTATTAGGCACCCCCCCTT
TCAGGCCCATAACAGAGCACAGGTTACATTTTAGGAAGTTTTTGTGTTTA
ATATGTGTGGAACTTTTTGGAGAGCTATTTTTGATTGTCGCTGCTGGGAG
TCTCTGTAACCCACGATGGATTCCTCGTTGGACTTCAATTAACTTATTGC
ATTTCATTATCTTGCCCGATCTCTCGTGATATTTTCCCCTTTCAAGTCTT
ACTTCCTCTTTTTCTATCCGTGTTTCGTGACTCCTTACCTCTTTTTCTTA
TTTTTATACTCATATTATTTTTTTTCTCTTACCTCCTCTTTTTTCCCTTT
TTTTTCTTCCTTGCAACTCTCTTTTGATACTCTTAAAATTAATAATCTTC
CCCTTGTATCCATCTCTTTTACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_o16.g1 MSMg01no359_o16.g1 CHROMAT_FILE:
MSMg01no359_o16.g1 PHD_FILE: MSMg01no359_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:31 2005
         (337 letters)



>mm_chr4_111256152_111256888
          Length = 737

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagagtctgacttcagtcacgtagaagcccatcttgaattcatgaatgccgaagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tggagagtctgacttcagtcacgtagaagcccatcttgaattcatgaatgcagaagctgt 260

                                                                       
Query: 61  tcccttcactccctctctcttactgttatctgttctctataccttggcgtctcagttaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tcccttcactccctctctcttactgttatctgttctctataccttggcttctcagttaga 320

                                                                       
Query: 121 gaagctttggtccccattctacccgagtcatggttaaaccgctgtgagctgtaaaggagg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagctttggtccgcattctacccgagtcatggttaaaccgctgtgagctgtaaaggagg 380

                                                                       
Query: 181 ctctgggcatggtctgacaccccagtttacttccaagtcaactcttctcattagcttgcg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgggcatggtctgacgccccagtttacttccaagtcaactcttctcattagcttgcg 440

                                                                       
Query: 241 ctattcatttcacccctcccacacgcttccccttctgtgtccttggctccacagaatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctattcatttcacccctcccacacgcttccccttctgtgtccttggctccacagaatgag 500

                                                
Query: 301 gtctgtgtatacagcgtgctacttactattaggcacc 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgtgtatacagcgtgctacttactattaggcacc 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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