BAC Information

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BAC

Clone NameMSMg01-360B17
Chromosome4 (Build37)
Map Location 55,710,115 - 55,710,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360B17.T7 (MSMg01no360_b17.b1)MSMg01-360B17.TJ (MSMg01no360_b17.g1)
ACCAG469362AG469363
length760839
length of high quality
(start - end)		466 (72 - 537)129 (77 - 205)
definitionCHROMAT_FILE: MSMg01no360_b17.b1 PHD_FILE: MSMg01no360_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:46 2005CHROMAT_FILE: MSMg01no360_b17.g1 PHD_FILE: MSMg01no360_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAATCCGCGGAA
TTCCATACAATCTTCCATGTGAACCTGCCCACCTGATGACTGGCACAGGC
AGACAGGCTTTCTACTTGGTTTTCAATTGCTCAACAATTTAGTCTTATAT
AACCCTACAAGTTCCCTTGACCCTGACAGAACTTATCCTGCTTATAGGTG
GACACATTTGCAATTTCCTCATTTGTTTTCCTTTGTACCCTTCATGTTTG
GCAAGCAGATATCGAGAGCCCATCACACGGGAAACTACTGTGCAAATGAG
AAGAAATCGACTCCGAGTTATTTCTTTTATCTTTCGAAGAGGAGGATGCG
TTACAAATTTAAGTCAGTTTAGTAATCCAACCGAGGGTGTGTTTGCCTCT
CGATCCCTGTCTCCTGCTGTCCCTATTGAATCCGCCCACTCCTCCATCAC
ATACATATTTATTTTCCAACGAGTTCTGAAAGATTTCCAAGGTAGAGCAA
GAAACAGGGAATGCAGCTGACGTCTGCCTCCCCTGGGGATTATGTCACTC
CTTGATTTAATTTGTCTTGACATTTTCTCCACTGTACTTTCTGCTCCTCA
TCAGAAAGCACCCCTCTTGGAAAACAACGTACTTATAGACTACCTCGGGG
CAAACTTGAATAAGGTGGGAATAGCCCACGGGTAAAGTTTAAAATAGCCA
CCCAAGGCCCTGTCCCCTATAAGAAATGCCCCCTGAAAATTAAATTCTTT
GTTTTCCTCC

TTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCACAAGCACAGACTGGGGGA
AGGGTGGGGGGGGGCGGCAATGTAAAATGATACAGAGGCTATAGAAATAG
CATGTGGTTTGGTTTTTGCTTTTTTTTTAAATATTTATTTATTTATCTAT
TTACAAAACTCATACACTCAATTGTACACGACCCACCCATTCTACTTCTG
GCGACATTGCCCCAAGTTTTAAAAGCACCAATTGCGTATTTCGCCTCCGA
CAGATACAGCTGACGCTATTCCCTTTTTCTTCTCCTCGATGAATGTATCA
CGAAAATGTGGCCTGTTTCCCTACCATTATTTTATACTCAATGAACTTTT
TTGCATTCTCCTTATTGCCCCGCCCACCCTTTCACTACCTTCTCTGTCTA
TTCCTTCTATTATTTCCTTTCCTTCTCCATCTTTCTTTATTTATTACTTC
TCACCCATCTTTACCCCCTTTATTTCACTTTTCTCATCCACCTCCCTTAT
CCTAAATAATCCTTCCATTTATACTTTTTTCCTATTCCTCTTTTTTCACT
CCCCTTCTTCTTCTTTCACATTCATTCATTTTTACCTATTATACATCGCC
TTAATTCTTTCTCTTTTTCCCCTATTCTTTCCTTTCCCTCCTTTTTCCCA
CTCCCTCCCACTTTACTTTTTACGCTTCACACCCTACTCTTTTTTCCCAC
TTCTATCCTCTTTTCTCTCCTATTCTTCTCTATCTTTTTTGTCTTCTTCC
TCTATTTCTTCTACACTTTTTTTATCTCCCCTTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_b17.b1 MSMg01no360_b17.b1 CHROMAT_FILE:
MSMg01no360_b17.b1 PHD_FILE: MSMg01no360_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:46 2005
         (466 letters)



>mm_chr4_55709915_55710780
          Length = 866

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctgcccacctgatgactggcacaggcagacaggctttctacttggttttcaattgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aacctgcccacctgatgactggcacaggcagacaggctttctacttggttttcaattgct 607

                                                                       
Query: 61  caacaatttagtcttatataaccctacaagttcccttgaccctgacagaacttatcctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 caacaatttagtcttatataaccctacaagttcccttgaccctgacagaacttatcctgc 547

                                                                       
Query: 121 ttataggtggacacatttgcaatttcctcatttgttttcctttgtacccttcatgtttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttataggtggacacatttgcaatttcctcatttgttttcctttgtacccttcatgtttgg 487

                                                                       
Query: 181 caagcagatatcgagagcccatcacacgggaaactactgtgcaaatgagaagaaatcgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caagcagatatcgagagcccatcacacgggaaactactgtgcaaatgagaagaaatcgac 427

                                                                       
Query: 241 tccgagttatttcttttatctttcgaagaggaggatgcgttacaaatttaagtcagttta 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tccgagttacttcttttatctttcgaagaggaggatgcgttacaaatttaagtcagttta 367

                                                                       
Query: 301 gtaatccaaccgagggtgtgtttgcctctcgatccctgtctcctgctgtccctattgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtaatccaaccgagggtgtgtttgcctctcgatccctgtctcctgctgtccctattgaat 307

                                                                       
Query: 361 ccgcccactcctccatcacatacatatttattttccaacgagttctgaaagatttccaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccgcccactcctccatcacatacatatttattttccaacgagttctgaaagatttccaag 247

                                                         
Query: 421 gtagagcaagaaacagggaatgcagctgacgtctgcctcccctggg 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtagagcaagaaacagggaatgcagctgacgtctgcctcccctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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