Query= MSMg01no360_b19.b1 MSMg01no360_b19.b1 CHROMAT_FILE:
MSMg01no360_b19.b1 PHD_FILE: MSMg01no360_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:47 2005
(518 letters)
>mm_chr4_153600786_153601703
Length = 918
Score = 903 bits (467), Expect = 0.0
Identities = 495/513 (96%), Gaps = 14/513 (2%)
Strand = Plus / Minus
Query: 6 gaattccagaccaatgacgaaccgtgtgtcaaaaagaaagtgaagaagcatctacaaaca 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaattccagaccaatgaggaaccgtgtgtcaaaaagaaagtgaagaagcatctacaaaca 759
Query: 66 ccactacaggacggacggacagacggacacacacacacacacacacacacacaccaaaca 125
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 758 ccactacaggacggacggacagacgg--------------acacacacacacaccaaaca 713
Query: 126 aaataaatattgaaaagcctgataggtctgccacacacaggccgaggctcacctgttcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaataaatattgaaaagcctgataggtctgccacacacaggccgaggctcacctgttcag 653
Query: 186 aagaactagttcaagacagagaccagatcccacccagcaacgcaggggcagtggcagtgg 245
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 652 aagaactagttcaagacagagaccagatcccacccagcaacgcagaggcagtggcagtgg 593
Query: 246 ctagtgtcactatggccacccagtccagctgagtgtatttggccccggctccagcagagc 305
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 ctagtgtcactatggccacccagtccagctgagtggatttggccccggctccagcagagc 533
Query: 306 ctcccagaacatgacatatatcagcctgaaccagctctcagggttggggccaagacacct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctcccagaacatgacatatatcagcctgaaccagctctcagggttggggccaagacacct 473
Query: 366 ccagccaggctcctttgccagtcctgtttcacggcgacaattcatcactcttggtggttt 425
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccagccaggctcccttgccagtcctgtttcacggcgacaattcatcactcttggtggttt 413
Query: 426 ctgggctcaccctgccgtcccctctgcacacacctccctgcacaagcaagcaaggcaggc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctgggctcaccctgccgtcccctctgcacacacctccctgcacaagcaagcaaggcaggc 353
Query: 486 ctccccttctgggacatcctcatttcctactgt 518
|||||||||||||||||||||||||||||||||
Sbjct: 352 ctccccttctgggacatcctcatttcctactgt 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_b19.g1 MSMg01no360_b19.g1 CHROMAT_FILE:
MSMg01no360_b19.g1 PHD_FILE: MSMg01no360_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:47 2005
(448 letters)
>mm_chr4_153417415_153418262
Length = 848
Score = 797 bits (412), Expect = 0.0
Identities = 439/448 (97%)
Strand = Plus / Plus
Query: 1 accacggggtaggtgagtcatggaaacatggcccggagggctggccaattggagttaaga 60
||||| || ||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 201 accacaggataggtgaatcatgaaaacatggcccagagggctggccaattggagttaaga 260
Query: 61 gcagcctctgatggaacatagcaagttataactctggcttattgataggagagaggcgca 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcctctgatgaaacatagcaagttataactctggcttattgataggagagaggcgca 320
Query: 121 atagctctaatacttgaaaagcttattataagtataaaaattgtgtgtcttttatctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagctctaatacttgaaaagcttattataagtataaaaattgtgtgtcttttatctggg 380
Query: 181 cactgaatgatcaaaagcggggtagaaacccggtttgagaataaatatttgctaaagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgaatgatcaaaagcggggtagaaacccggtttgagaataaatatttgctaaagcat 440
Query: 241 ccctgggttcagcctgagaagctctcagcaaggacagcctgcatctcctgtcaatcccct 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgggctcagcctgagaagctctcagcaaggacagcctgcatctcctgtcaatcccct 500
Query: 301 tccttaatttgttcaatcgtttagagtgttctgcagcctcatttttttttaaagcgtgct 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tccttaatttgttcaatcgtttagagtgttctgcagcctcattttttttttaagcgtgct 560
Query: 361 gtttcttcagggtgatatatttgtgttgcaggacacgtggacgctgaatcctgggcactt 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttcttcagggtgatacatttgtgttgcaggacacgtggacgctgaatcctgggcactt 620
Query: 421 tggtcctgggcttctcgtcctctgtgtt 448
||||||||||||||||||||||||||||
Sbjct: 621 tggtcctgggcttctcgtcctctgtgtt 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
