ACTAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGCATCCGCGGAAT
CATGATATGTCCAAACATCTCTCCCAGAACAGATCCATAACACTTGCAGT
GAAGTAATCCTCTCCCTCAGCTTTTACACTCAGCTCTTTTAATACTTATT
CTCTGGGGCAGTGGTGACACATGCCTTTAATCCCAGCACTTGGGAGGCAA
AGGCAGGAAGTACCTCTGAGTTCAAGGCCAGTCTGGTCTACAGAGGGAGT
TCCAGAGTGGACAGCCAGGGCTACTCAGAAGAATCTCTGTCTCAAAAACA
ACAATAACAACCCCCATTTTTATTACTAACAAACAAGCATCCCCCAACAC
CCCACAAACAAACTAACAACCCTTCCCCCCCAAAACAACCTTATTGTTCC
TCGGTAATGTATGAGACCTTAGTAAGTTTTATTTTGCATATTTTTGGATA
GTTTCCTCTTCAGTGTCGTTTTATATCACCCCCTCTTTACCCTTCAATTT
TATCTGCGTCCCCCATGATTCCCCCCTTTAACCCTATTTTTTCTCCCCCT
CATTTATTCAAACTCCCTGCATACTTTTTACCTCCCTCCAATTTCCCCCC
ACAAAAAGTTCCTACTTTCCCCCCCCAAGTTTTCCTTTTTACTCCCTTTC
CCTATGTCCTTTCTTTTTACCTATTAACTCTCTCCCGATTCTAATATTTG
TTCCGTTGTTTATTCATTCACCTCTTCATTTCCCCCCTTTTTCTCTTACT
CCTACCCCCTTT

ATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCTCATGGCCTAAAATTGAATATTATATA
ATTTGGAGAAGGATGAAACATTATATTGGGCAGACAAAGGGAAGGTGGAA
TAGAAACTAGGGAAAGAGAATACATAGAAAATGAAAGAGGGATAGGACAC
AAAGAATGGGGAAGAAGAATATAGTAGCAGAAACCCAAACCTAGAGAAAT
CTCAATATTTAAAGGGTACCACAGATATGGAACATGGTAATATAGTGGTA
GATCTGACCAATTTAGGGACACAGCATGTATTCATATTCACTGAGTTGTA
TTTTCATTGCCAGTCAATTTTTGGGTTTGGAGAGAGAAAAAAACAAAATG
GAGCCCAATGTATTCATTTGAACTCAACTAACCTGAACTAAAAATTCACT
GCCCCCAAACACCTGAATGAGCTTAGTCATTGATATAGGCTGAAGCAGTA
TTGATTTTAAGGTGGCTGCGTTTGAAAGGCCTACAGAGAATGGCAGATAG
TTATCTACACTGGATTAGAGCCTTTCTGTGTTCTCTTCCACCTATCTTTC
ATTCCTCACACTGCCTCCCCAACCCCATACAATAACATAGACTATATGGG
TCTTTTTATATTCCGCTACTCCCTGCCAATAAAGAATCAGGAAACCAAGG
TACCAAGGTCTTCCCTACCTGTAACTCATTTGAATAAATGCATAACTATA
TCCCTTTGA

Query= MSMg01no360_g11.g1 MSMg01no360_g11.g1 CHROMAT_FILE:
MSMg01no360_g11.g1 PHD_FILE: MSMg01no360_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:08 2005
         (495 letters)



>mm_chr4_113552645_113553539
          Length = 895

 Score =  717 bits (371), Expect = 0.0
 Identities = 466/499 (93%), Gaps = 9/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctcatggcctaaaattgaatattatataatttggagaaggatgaaacattatattggg 60
           |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 202 acctcatggcctaaaaatgaatattatataatttggcgaaagatgaaacattatattggg 261

                                                                       
Query: 61  cagacaaagggaaggtggaatagaaactagggaaagagaatacatagaaaatgaaagagg 120
           ||||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||||||
Sbjct: 262 cagacaaagggaaggtggagtagacactagggaaagagaagacatagaaaaagaaagagg 321

                                                                       
Query: 121 gataggacacaaagaatggggaagaagaatatagtagcagaaacccaaacctagagaaat 180
           ||||| ||||| |||| |||||||||||||||||||||| ||||| |||||| |||||| 
Sbjct: 322 gatagaacacagagaaaggggaagaagaatatagtagcaaaaacc-aaacctggagaaa- 379

                                                                       
Query: 181 ct-caatatttaaagggtaccacagatatggaacatggtaatatagtggtagatctgacc 239
           || ||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 380 cttcaacatttaaagggtcccacagatatggaatatggtaatatattggtagatctgtcc 439

                                                                       
Query: 240 aatttagggacacagca-tgtattcatattcactgagttgtattttcattgccagtcaat 298
           |||||||||||||| |  |||||||||||| |||||||||| ||||||||||||||| ||
Sbjct: 440 aatttagggacaca-ctctgtattcatattaactgagttgtgttttcattgccagtccat 498

                                                                       
Query: 299 ttttgggtttggagagagaaaaaaacaaaatggagcccaatgtattcatttgaactcaac 358
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 499 ttttgggtttggagagagaacaaaacaaaatggagcccaatgtattcatttaaactcaac 558

                                                                       
Query: 359 taacctgaac--taaaaattcactgcccccaaacacctgaatgagcttagtcattgatat 416
           |||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taacctg--cgataaaaattcactgcccccaaacacctgaatgagcttagtcattgatat 616

                                                                       
Query: 417 aggctgaagcagtattgattttaaggtggctgcgtttgaaaggcctacagagaatggcag 476
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 617 aggctgaagcagtattgattttaaggtggctgcgtttgaaaggtctacagagaatggcag 676

                              
Query: 477 atagttatctacactggat 495
           |||||||||||||||||||
Sbjct: 677 atagttatctacactggat 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)