Query= MSMg01no360_l16.b1 MSMg01no360_l16.b1 CHROMAT_FILE:
MSMg01no360_l16.b1 PHD_FILE: MSMg01no360_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:33 2005
(504 letters)
>mm_chr4_109787529_109788432
Length = 904
Score = 944 bits (488), Expect = 0.0
Identities = 497/500 (99%)
Strand = Plus / Plus
Query: 5 gaattcctatgttgtccttcctatcccaactttgagaaccctgggcttctttagtttctc 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctatgttggacttcctatcccaactttgagaaccctgggcttctttagtttctc 264
Query: 65 caatgagatctttgtatttcaattctgtatcttagatagagctcctgtcttatcccgcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgagatctttgtatttcaattctgtatcttagatagagctcctgtcttatcccgcca 324
Query: 125 ctttgtgtagagacaaccttaactgcttctagcttgagactttcatggaagcattagtct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttgtgtagagacaaccttaactgcttctagcttgagactttcatggaagcattagtct 384
Query: 185 taagttcctttcactattcatccaaagattctttgagtacaactgtagaaagacccacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagttcctttcactattcatccaaagattctttgagtacaactgtagaaagacccacaa 444
Query: 245 gaagaagattcttgctatcctagaatgccaagatagacatacagataagacacataccag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagaagattcttgctatcctagaatgccaagatagacatacagataagacacataccag 504
Query: 305 gcttcaagatgagaactagagcatacaggatttcccactagtggggcagtgcttggaacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcttcaagatgagaactagagcatacaggatttcccactagtggggcagtgcttggaacc 564
Query: 365 tgcacgttctgtttcattgccctctgacctcaggcgagccactgatctctcggagattca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcacgttctgtttcattgccctctgacctcaggcgagccactgatctctcggagattca 624
Query: 425 ttctctttttgtgtaaggtggaaaaataacctacctcacaactgaataaacaaccatgta 484
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 ttctctttttgtgtaaggtggaaaaataacctacctcacaaccgaataaacaaccatgta 684
Query: 485 gacatctaagcttggtgcct 504
||||||||||||||||||||
Sbjct: 685 gacatctaagcttggtgcct 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_l16.g1 MSMg01no360_l16.g1 CHROMAT_FILE:
MSMg01no360_l16.g1 PHD_FILE: MSMg01no360_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:33 2005
(517 letters)
>mm_chr4_109953079_109953997
Length = 919
Score = 870 bits (450), Expect = 0.0
Identities = 485/508 (95%), Gaps = 20/508 (3%)
Strand = Plus / Minus
Query: 11 aaactacatttttggtgctcttatcaggctagtgcctcgctctcccacccctcccaggtc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 aaactacatttttggtgctcttatcaggctagtgcctcgctctcccacccctcccaggtc 860
Query: 71 tctcttctcccctctttctcccctaacccggagattctgcctccaccatttttgctttga 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tctcttctcccctctttctcccctaacccggagattctgcctccaccatttttgctttga 800
Query: 131 actagtcttacggagatccttgtagttaacacctgagattagcactcacacacacacaca 190
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 actagtcttacggagatccttgtagttaacacctgagattagcact-------------- 754
Query: 191 cacacacacacacacacgcacacgcacacgcacatgcaccagtaaaaattgtctcaagac 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ----cacacacacacacgcacacgcacacgcacatgcaccagtaaaaattgtctcaagac 698
Query: 251 tcaagaaatgctgagattaatcaaagaatctttaaataaatttcagttaagaaatcagta 310
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 697 tcaagaaatgctgagattaatcaaagaatctttaaattaatttcagttaagaaatcagta 638
Query: 311 aaaatattgaagaaatattgttagtacattgtgtttacatcttcgttgctgatgctattg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaaatattgaagaaatattgttagtacattgtgtttacatcttcgttgctgatgctattg 578
Query: 371 ttaaaggatacttatttttaaccccagaagtagttaaatacaaaactaacatatggggtt 430
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttaaaggatacttgtttttaaccccagaagtagttaaatacaaaactaacatatggggtt 518
Query: 431 ttgttagtgaaaaaaaaa-ttacatgacttaggtgtcccctgaaaatgacttttggtgga 489
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttgctagtgaaaaaaaaaattacatgacttaggtgtcccctgaaaatgacttttggtgga 458
Query: 490 ctcttgatttgaaaaa-agcatttattg 516
|||||||||||||||| |||||||||||
Sbjct: 457 ctcttgatttgaaaaatagcatttattg 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space: 460863
Effective search space used: 460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
