Query= MSMg01no360_p16.b1 MSMg01no360_p16.b1 CHROMAT_FILE:
MSMg01no360_p16.b1 PHD_FILE: MSMg01no360_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:52 2005
(595 letters)
>mm_chr4_49949333_49950327
Length = 995
Score = 1118 bits (578), Expect = 0.0
Identities = 589/594 (99%), Gaps = 4/594 (0%)
Strand = Plus / Plus
Query: 4 gaattcatattt--ttctcataagttttggacaaagagattaagactaagcctggcttga 61
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatatttgattc--ataagttttggacaaagagattaagactaagcctggcttga 261
Query: 62 gcctttgaaatctgaaacccaccccatgtcacacttcctccaacaaggccacacccacta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcctttgaaatctgaaacccaccccatgtcacacttcctccaacaaggccacacccacta 321
Query: 122 caggagatgcatacttaataatactttccaaacactccaccaactgcgaataaaacattc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caggagatgcatacttaataatactttccaaacactccaccaactgcgaataaaacattc 381
Query: 182 aaatctatgagtatattggcaccattgtcgttcaagccgtcatacgtagttaataactac 241
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 aaatctatgagtatattggcaccattgtcgttcaagccatcatacgtagttaataactac 441
Query: 242 atcattgctttgcttgatgtgcctaccttttacttacatgcccagaataactagcatttc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atcattgctttgcttgatgtgcctaccttttacttacatgcccagaataactagcatttc 501
Query: 302 atttcctcagatggagacaaacatgcatcttcttttccatgcactgatttattcttacgt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atttcctcagatggagacaaacatgcatcttcttttccatgcactgatttattcttacgt 561
Query: 362 cctccctgaaatggaaccttctggtttcttaggaaagtcagttgtgttgaatggtgtttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctccctgaaatggaaccttctggtttcttaggaaagtcagttgtgttgaatggtgtttt 621
Query: 422 gctggggcaagcacatgatggaacattttgttgaagcagacacaagtgaaaggatgtttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gctggggcaagcacatgatggaacattttgttgaagcagacacaagtgaaaggatgtttt 681
Query: 482 gctaaagcaagcacataacgaaggatttttggctaatgacatgaatgtattggttctcca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gctaaagcaagcacataacgaaggatttttggctaatgacatgaatgtattggttctcca 741
Query: 542 tacattctgtagttgagctccatttgttatgatgccataaacacaccaaaatct 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tacattctgtagttgagctccatttgttatgatgccataaacacaccaaaatct 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_p16.g1 MSMg01no360_p16.g1 CHROMAT_FILE:
MSMg01no360_p16.g1 PHD_FILE: MSMg01no360_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:52 2005
(535 letters)
>mm_chr4_50123834_50124768
Length = 935
Score = 984 bits (509), Expect = 0.0
Identities = 525/535 (98%), Gaps = 8/535 (1%)
Strand = Plus / Minus
Query: 1 atgaaggtattacctacaagtacacctaccaagtgcccaccaacaagcaggtggagagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 atgaaggtattacctacaagtacacctaccaagtgcccaccaacaagcaggtggagagtc 762
Query: 61 aaggtgttggccaatgagattcatctgcagggtctatttggataaggcaactgatcttca 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 761 aaggtgttggccaatgagattcatct--------tatttggataaggcaactgatcttca 710
Query: 121 gtttcagcctaatgctaaagagagagtgggagacaaaacaagaaaggtaaagagaagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gtttcagcctaatgctaaagagagagtgggagacaaaacaagaaaggtaaagagaagtga 650
Query: 181 aatatcctgacaatagatgtctcactttctgcagaatacagagaactgcactggtctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aatatcctgacaatagatgtctcactttctgcagaatacagagaactgcactggtctgat 590
Query: 241 taacacttctttcgggttatatgttcttaatggttgctgatggctgactctctgattgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 taacacttctttcgggttatatgttcttaatggttgctgatggctgactctctgattgca 530
Query: 301 ctttctacagaagggggaaaaatgagtaaaattagactcttgggaaagccctaatggtac 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctttctacagaagagggaaaaatgagtaaaattagactcttgggaaagccctaatggtac 470
Query: 361 atctgaactgcactttaatgttccaataattaggagtaattatttctgtatcgttttggc 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 469 atctgaactgcactttaatgttccaataattaggagcaattatttctgtatcgttttggc 410
Query: 421 ctgagaacccggccttttaggctgtcaagaggcagcagtgtgaaaagccctgttctgtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctgagaacccggccttttaggctgtcaagaggcagcagtgtgaaaagccctgttctgtgg 350
Query: 481 tgtgggtggcaaagaaatcttggtgatgaaacagtgcttcagctgcgtaaggaac 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtgggtggcaaagaaatcttggtgatgaaacagtgcttcagctgcgtaaggaac 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
