CCTTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAAGACATGTTGTAAAAACTTGTACTCCACCAAATTTTAAAA
ATCTAAAGGAGGTGGATAGTTTTCTCAATGGATTACATATAATAAAGACA
GTTTACAGAGAGCCAAGATCAACTTACATGGGCAGAAACTCAAAGTAAGG
CAACTAAAATCAAGAATAAGATGTTTGTCCACTCTCTCCATAAATATGAG
AACAATTCTTTGAAGAACGTACACATTTTCCTGTGTTATCAATTTAGAAA
CATATTAAAAATGATGCTATGTTTTGTATAAAACCATTCCTGATACCTCT
GTATGAAATCTCCTTGTCCAGTTGATTTACTACATCACCATTCAGTAACA
ACATTTGCTGTCTAAACTGAGTTGCTCACATTTGTTTTTAGGAGTCCTTT
GGCCAAAGGAAAACACACTTGTGGCCGGTGTCTTATGGCTTTGAAGGCCT
TCTACTCTTCTCACACTGTCATGCATTTGCCATTGTGTAGGTGGGAATAG
AGTATACCAGAAACACATTATCATGTTCAACCAACTGAATGTTGAAAGAC
ACTTGAGGTACTGTCCCCATAACCTTACTTCTTANGAGCTTGCTGATATG
ATGACCTCTAAAACTGCCTGGTCTCTTATCTTCTTCCACACAGGTGGCAC
TATTTTTCTTAATAAAACTGTAATGATTTTAGTAAGGAAGAGTTAACCCC
CAA

TTCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGTGGGCAGTCTCAGGAT
GGTCCTTCCTTCCTTCTCAACTCCAAACTTTATCTTCATAACTCCTTCTA
TGGGTATTTTGATCCCCCTTTTAGGAAGGAACAAAGTATCCACACTTTGG
GCTTTATTCTTCTTGAGTTTCATCAGTTTCTGGGCTAATATCTTCTTATC
AGTGAGTGCATATTATGTGTGTGTGGTGGTGGGTTTTTTGTTTGTTTNTT
TTTTNNTTTTNTTCACTCTTTTTTCCCCCTCCTCTTCTTTTTTCTCTTTT
TTCTTCCCTTCCCTCCCTTTTCTTTTTCCTTCTCTCCCCTTTTTTTCTTT
TGATCCTTTTTTCCTCTCCTTCTCCTCTCTCTCTTGTCGTTCTCACCCCC
CATTTTTCTTCTTCCTTTCTCTATTTTTTTCCTTCTCGCCCTTTTGTTCC
TTCTCCCTTCTTTTTCCTCCGTTCTTTCTTCTCTTTTCCTTTTCCCCCTC
CTTTTCTTCTCTACACTTCACGTTCCTGTTATTTGTTGTGTTCCGCGTCT
TCATTTATCTCTTTTTTCTATTGTGTTCCCCTTCTGCTTTTTTCTTTTTT
TTTTTTAACCTATCTCTTTCAGTATTTCTCGTTCTGCCACTTCTCTTCAT
TTTGTTTCTTCTCTCCACCTCTTCTCTTTTTGCTCTTCCTGCCTTCTGTC
CTCTGTGTTTTCTCTTATTTCGTCAGTCTTTCTCCTGCGGTCTTTCTTCT
TTCCCTCTCTAACACCCCCACACACAACCTCCCCCACTCCCCGGCGGCTC
TGTCCTCCTCTTTACGTTCTCTCGTTCTTCTTCATCTTN

Query= MSMg01no361_f02.b1 MSMg01no361_f02.b1 CHROMAT_FILE:
MSMg01no361_f02.b1 PHD_FILE: MSMg01no361_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:19 2005
         (640 letters)



>mm_chr4_20988790_20989829
          Length = 1040

 Score = 1178 bits (609), Expect = 0.0
 Identities = 629/636 (98%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctaagacatgttgtaaaaacttgtactccaccaaattttaaaaatctaaaggagg 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 gaattctaagacatgttgtaaaaacttgtactccaccaaattttaaaaatctaaaggagg 971

                                                                        
Query: 65   tggatagttttctcaatggattacatataataaagacagtttacagagagccaagatcaa 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  tggatagttttctcaatggattacatataataaagacagtttacagagagccaagatcaa 911

                                                                        
Query: 125  cttacatgggcagaaactcaaagtaaggcaactaaaatcaagaataagatgtttgtccac 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  cttacatgggcagaaactcaaagtaaggcaactaaaatcaagaataagatgtttgtccac 851

                                                                        
Query: 185  tctctccataaatatgagaacaattctttgaagaacgtacacattttcctgtgttatcaa 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  tctctccataaatatgagaacaattctttgaagaacgtacacattttcctgtgttatcaa 791

                                                                        
Query: 245  tttagaaacatattaaaaatgatgctatgttttgtataaaaccattcctgatacctctgt 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  tttagaaacatattaaaaatgatgctatgttttgtataaaaccattcctgatacctctgt 731

                                                                        
Query: 305  atgaaatctccttgtccagttgatttactacatcaccattcagtaacaacatttgctgtc 364
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 730  atgaaatctccttgtccagttgatttactacatcaccattcagtaacgacatttgctgtc 671

                                                                        
Query: 365  taaactgagttgctcacatttgtttttaggagtcctttggccaaaggaaaacacacttgt 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  taaactgagttgctcacatttgtttttaggagtcctttggccaaaggaaaacacacttgt 611

                                                                        
Query: 425  ggccggtgtcttatggctttgaaggccttctactcttctcacactgtcatgcatttgcca 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  ggccggtgtcttatggctttgaaggccttctactcttctcacactgtcatgcatttgcca 551

                                                                        
Query: 485  ttgtgtaggtgggaatagagtataccagaaacacattatcatgttcaaccaactgaatgt 544
            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 550  ttgtgtaggtggggatagagtataccagaaacacattatcatgttcaacaaactgaatgt 491

                                                                        
Query: 545  tgaaagacacttgaggtactgtccccataaccttacttcttangagcttgctgatatgat 604
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 490  tgaaagacacttgaggtactgtccccataacctgacttcttaggagcttgctgatatgat 431

                                                
Query: 605  gacctctaaaactgcctggtctcttatcttcttcca 640
            |||||||||| ||||||||||||||| |||||||||
Sbjct: 430  gacctctaaagctgcctggtctcttagcttcttcca 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)