Query= MSMg01no361_h21.b1 MSMg01no361_h21.b1 CHROMAT_FILE:
MSMg01no361_h21.b1 PHD_FILE: MSMg01no361_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:33 2005
(637 letters)
>mm_chr4_24029065_24030100
Length = 1036
Score = 1050 bits (543), Expect = 0.0
Identities = 612/635 (96%), Gaps = 5/635 (0%)
Strand = Plus / Minus
Query: 5 gaattcagaaatgaatcttcagatgaatggtcccagaaatatactgatttgaagacatac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattcagaaatgaatcttcagatgaatggtcccagaaatatactgatttgaagacatac 777
Query: 65 caatacagggttggtctaaaccaccatattgatcccagtctgaattgtcacattgcttct 124
|||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 776 caatacaggggtggtttaaagcaccatattgatcccagtctgaattgtcacattgcttcc 717
Query: 125 ttttgcctttctcgacctataactttttctcttatttataacacctagtgtgggatttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 716 ttttgcctttctcgacctataactttttctcttatttataacacctagtgtggga-ttct 658
Query: 185 aacaacaccagacacactttgtgtctaaaccattcttcaatcatttctcactataggctg 244
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 657 aacaacaccagacacactttgtgtctaaaccattctttgatcatttctcactataggctg 598
Query: 245 gttctatttgtgttatagtcttctgaccaacaaggaactacttcaagcttgcagagggaa 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 597 gttctatctgtgttatagtcttctgaccaacaaggaactacttcaagcttgcagatggaa 538
Query: 305 tggttttcatatatcccatgtgactttaccaggtgattc-ctatgttttttgaaaggctt 363
||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||
Sbjct: 537 tggttttcatatatctcgtgtgactttaccaggtga-tctctatgttttttgaaaggctt 479
Query: 364 atgtatctttgaaagaaaggtatttgaaagaaagatatttaagtggacaagagataacgt 423
||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 478 atgtatccttgaaagaaaggtatttgacagaaagatatttaagtagacaagagataacgt 419
Query: 424 ttttattcaaatagtaaactgtgggctttattttcaatgttaaacagaaagaattattga 483
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 ttttattcaaatagtaaactgtgggctttattttcaatgtggaacagaaagaattattga 359
Query: 484 acagagaggctcgattttttgacagaaactctgaaaagataactatttacaattcccac- 542
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 358 acagagaggctagattttttgacagaaactctgaaaagataactatttataa-tccccca 300
Query: 543 aaaccctattgaaatatacagttcagtacctcatcttgcttgcctctccatgaaaggtca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaaccctattgaaatatacagttcagtacctcatcttgcttgcctctccatgaaaggtca 240
Query: 603 aaagaacttcctgctgtgatgtgtctgaatccctg 637
|||||||||||||||||||||||||||||||||||
Sbjct: 239 aaagaacttcctgctgtgatgtgtctgaatccctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_h21.g1 MSMg01no361_h21.g1 CHROMAT_FILE:
MSMg01no361_h21.g1 PHD_FILE: MSMg01no361_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:33 2005
(428 letters)
>mm_chr4_23918045_23918872
Length = 828
Score = 797 bits (412), Expect = 0.0
Identities = 424/428 (99%)
Strand = Plus / Plus
Query: 1 ttacctagtaactttaaatgttaacttttaataaacggtaatagtgactgttaaaacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacctagtaactttaaatgttaacttttaataaacggtaatagtgactgttaaaacagt 260
Query: 61 attccttttttcaatatgaaagaaaatttattgaagatatctataatggctgaaaatatg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 attccttttttcaatatgaaagaaaatttattgaagttatctataatggctgaaaatatg 320
Query: 121 aattcttttaaattcctaatgtttgtgttttaataaagggtaatagtgttgttaaaactg 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcttttaaattcctaatatttgtgttttaataaagggtaatagtgttgttaaaactg 380
Query: 181 tattattctttttaacatgaaagaacaattattgaatttatctacaatggctaaaaatat 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tattattctttttaacatgaaagaaaaattattgaatttatctacaatggctaaaaatat 440
Query: 241 gaattattttaaaattctaatgtatatgagaaagccctgagatagatattattctcccat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattcttttaaaattctaatgtatatgagaaagccctgagatagatattattctcccat 500
Query: 301 ttaaagatgtaaagttgtagaataagaaagatggatattgtataaaggtcttttggtctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaagatgtaaagttgtagaataagaaagatggatattgtataaaggtcttttggtctt 560
Query: 361 agaagttggggggagtggagaggggctattccaaagttcttacaaggggtcagactctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagttggggggagtggagaggggctattccaaagttcttacaaggggtcagactctga 620
Query: 421 ggagttgt 428
||||||||
Sbjct: 621 ggagttgt 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
