BAC Information

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BAC

Clone NameMSMg01-362D12
Chromosome4 (Build37)
Map Location 43,184,667 - 43,185,186
singlet/doubletsinglet
Overlap geneUnc13b
Upstream geneLOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik
Downstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362D12.T7 (MSMg01no362_d12.b1)MSMg01-362D12.TJ (MSMg01no362_d12.g1)
ACCAG470957AG470958
length7601,143
length of high quality
(start - end)		524 (49 - 572)---
definitionCHROMAT_FILE: MSMg01no362_d12.b1 PHD_FILE: MSMg01no362_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:30 2005CHROMAT_FILE: MSMg01no362_d12.g1 PHD_FILE: MSMg01no362_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCGGTATTACCCAGTTTCTCTAGATGATTATGAATATTTGG
AAATGAACTAGATTTTACTGAACTAAGTCTGGTATCCATGTGGCAATTTT
GTTGGACCTCTTTATCAGTGGTTGCTACTGAGCTGTGAAAACTCTGATTA
TTAACAGTGCTATAACTGTCTGTGAGAGGAAATTTAAACAGAGGGAAAAT
GCTTCCTTTCTCTTTTACATCCTGATGCTTTTCAGAATGGCTAAGAATAT
TGAAAAACGGAATATGCAGTTTTCTGCTAAATGAAAATGAATGTCCATCT
TTCTTAGCATCTCTTTCCTGTCCATCTTCCTCCAGCTTAAGAATTGTTAC
AGATTCTGACGACGTCTCCTTTTTACAGCTCTCAGGAGAAGTGAACAGGA
GCTGACTGAATGATTTTCTTAGTGGCTCAAGGAAATCCTCATCACTGGTA
ACTTTGTCTTCCTCTAATGCTTTTGTAGAAGATTCCTGATTTGCAAAGGT
ACTGCCAGCTACACCACAACGCTCCATAGTATCTTTGGCACTTTGTTTGT
GGTTGGTCCTTTGATAGAGAAAAGCTCTACCCAAAGTTTTCCTTTCCCAA
TGGATTCTCCCTAACCACCTTTCTTATCGAAAACTAATTAGCTAGTTTTG
ATAGGTCCTCCCCCCACCTTTGAAAGAATGTAAAACCTTTCCTTTCTTTG
CTTTTGTAAG

CCCCCTATTTGGGCNNCTNNNCGGTNTCNCCATCCAAAAACGATGTTACC
AAAAAAAGAGGAAAGNAAAAACAAAAAAAGATTTTCCCACACAAACAAAG
AGATGACACACCCAAAAACTACATATAATAAACAGCCATTAAATAAATCC
CATACTCCTCTTTTTACACACCCGCCCTCCTCACCCACGTATACATTCAA
ACGCCGGCTAGAGTACACTCCCCATCCACCGGAGGCGGCGGCGGGGAGGA
ACATAGAGCCTCACAACAGCCATCCACCCCCCCTCCATCTGTGACCTAAA
TCTATCGCACCACATATCGCCCTGCGAGGCACACCCCGAAACTGATCACC
TCAGAGTCTCCGCATTCCCTATATTGCACCCTCTGTCGGAGGTGAATTGC
GAAGATCGCGACTATTATCTACGCGGCCGAGCCTATAACGCCCCTGCACG
TCTCGATCACGTAATCTTTGTGCTACGCGGCGAAATTGCAGCGGCGACCT
GGTATTTCCGCCTCACCGTAGTGTAGTTTATTTGCGCGTCCGTGACCGCG
AAAGTGACCGGGTGACAACGACAAGGCGAAAGAGAGAATACAAGACGTTA
CAGAGTGAAACACACAACACAAATGAATAGACGAACGACACCTATACACA
TGTAATCATGATTATAATATTAAGAATAGCATAGAAGTACGCATAAGGAA
GTAACACAGCACGAATATGTACAGCCGCGACCGCGCAAGTTATCAGCGTC
TGCGACTGAGTCAATCAGTAGCAACCGCAACAAGGCGATTATGATATCCA
CACAGACACCTGGAGTAATGCTATCGATGCGCTACACCTCCCCACCACAT
TTGCACATTTACCATAATTAAACCACCTCCCCGACCGACTTCTCTATCCC
TTATATAGTACCCGCGGAACCAATCGACCCTAATTTCTAGACGATAACGG
TCTATTGATCCATTAAGCTAAGTCATAAAGTTACGAATGTGCGAGGATAC
GCGTTTTAATGTACCCACTTGAGCAGCAGTGTACCTTTATATACATGTGT
ACGCAGGGTGTGCATATGGGTGAGAGATTGCCGGAAGAGGCATGCTGGCG
CGTAAACTAGTGTATATAATTATACTGTCGCCCCGCATTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_d12.b1 MSMg01no362_d12.b1 CHROMAT_FILE:
MSMg01no362_d12.b1 PHD_FILE: MSMg01no362_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:30 2005
         (524 letters)



>mm_chr4_43184463_43185386
          Length = 924

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcggtattacccagtttctctagatgattatgaatatttggaaatgaactaga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattcctcggtactacccagtttctctagatgattatgaatatttggaaatgaactaga 665

                                                                       
Query: 65  ttttactgaactaagtctggtatccatgtggcaattttgttggacctctttatcagtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttttactgaactaagtctggtatccatgtggcaattttgttggacctctttatcagtggt 605

                                                                       
Query: 125 tgctactgagctgtgaaaactctgattattaacagtgctataactgtctgtgagaggaaa 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 604 tgctactgagctgtgaaaactctgattattaacagtgctatgactgtctgtgagaggaaa 545

                                                                       
Query: 185 tttaaacagagggaaaatgcttcctttctcttttacatcctgatgcttttcagaatggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttaaacagagggaaaatgcttcctttctcttttacatcctgatgcttttcagaatggct 485

                                                                       
Query: 245 aagaatattgaaaaacggaatatgcagttttctgctaaatgaaaatgaatgtccatcttt 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagaatattgaaaaatggaatatgcagttttctgctaaatgaaaatgaatgtccatcttt 425

                                                                       
Query: 305 cttagcatctctttcctgtccatcttcctccagcttaagaattgttacagattctgacga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttagcatctctttcctgtccatcttcctccagcttaagaattgttacagattctgacga 365

                                                                       
Query: 365 cgtctcctttttacagctctcaggagaagtgaacaggagctgactgaatgattttcttag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cgtctcctttttacagctctcaggagaagtgaacaggagctgactgaatgattttcttag 305

                                                                       
Query: 425 tggctcaaggaaatcctcatcactggtaactttgtcttcctctaatgcttttgtagaaga 484
           |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 304 tggctcaaggaaatcctcatcactggtaaccttgtcctcctctaatgcttttgtagaaga 245

                                                   
Query: 485 ttcctgatttgcaaaggtactgccagctacaccacaacgc 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttcctgatttgcaaaggtactgccagctacaccacaacgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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