Query= MSMg01no362_d22.b1 MSMg01no362_d22.b1 CHROMAT_FILE:
MSMg01no362_d22.b1 PHD_FILE: MSMg01no362_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:32 2005
(490 letters)
>mm_chr4_14365842_14366731
Length = 890
Score = 808 bits (418), Expect = 0.0
Identities = 466/482 (96%)
Strand = Plus / Plus
Query: 5 gaattctatctatctctctcccagagagttgtcatcagatgaaggaagttgcttgcttga 64
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattatatctagctctctcccagagagttgtcatcagatgaaggaagttgcttgcttga 264
Query: 65 gccagcatcgtctctggagacaacatggatctaatgatgttcaggtgtagactaaggcac 124
||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 265 gccagcatcatctctggagacaacatagatctaatgatgtgcaggtgtaggctaaggcac 324
Query: 125 tccattcacttcactaaatctctgggagacctatccagagtcttttcatgttactatggt 184
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 tccattcacttcactgtatctctgagagacctatccagagtcttttcatgttactatggt 384
Query: 185 ttcattgtgcaccccaagattcatcttttataaaccacatccccagggctccaatatcga 244
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ttaattgtgcaccccaagattcatcttttgtaaaccacatccccagggctccaatatcga 444
Query: 245 gagataaaaactgtaagagatgattaatgagtttattataaaatcaagttcagcttctct 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 gagataaaaactgtaagagatgattaatgagtttattataaaatcaagctcagcttctct 504
Query: 305 ctcgtgttgtctctaagcagtgacatcttttgccctgtcagaatacaacaacacagccct 364
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 cttgtgttgtctctaagcagtgacatcttttgccctgtcagaatacaacagcacagccct 564
Query: 365 cacctgatgcagccctgatcttgggtttcatgttcataatggtaataaatctctgttcgt 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 cacctgatgcagccctgatcttgggtttcatgtccataatggtaataaatctctgttcgt 624
Query: 425 tatcaattatcgagcctgtgtatttccttagacccgcacaaaatggatcaacctacatat 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatcaattatcgagtctgtgtatttccttagacccgcacaaaatggatcaacctacatat 684
Query: 485 gc 486
||
Sbjct: 685 gc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_d22.g1 MSMg01no362_d22.g1 CHROMAT_FILE:
MSMg01no362_d22.g1 PHD_FILE: MSMg01no362_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:32 2005
(416 letters)
>mm_chr4_14522686_14523501
Length = 816
Score = 750 bits (388), Expect = 0.0
Identities = 410/418 (98%), Gaps = 2/418 (0%)
Strand = Plus / Minus
Query: 1 cttagagctgttggcataggcatttgtgagctgcccagcatgggtgatggaaatcaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cttagagctgttggcataggcatttgtgagctgcccagcatgggtgatggaaatcaaact 572
Query: 61 tcactcctcggcaggaccaggaagttctctcagttactgaactatctttccaaccctgaa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcactcctcagcaggaccaggaagttctctcagttactgaactatctttccaaccctgaa 512
Query: 121 actaactcttcaaactatttctgttatatactttatccatgttaaagaaagagatgaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actaactcttcaaactatttctgttatatactttatccatgttaaagaaagagatgaatg 452
Query: 181 gttttctaattaagtagataaacaagaggtgattattcagaaggtgggagagagaattga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 451 cttttctaattaagtagataaacaagaggtgattattcagaaggtgggagagataattga 392
Query: 241 ctgctccagcttattgttcacatgccttcatcacagacggcagcgtcaagtgcagccaaa 300
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 391 ctgctccagcttattgttcacatgcgttcatcacagacggcagcgtcaagtacagccaaa 332
Query: 301 tggtttatagttaag--tgtgccagtctaatacagaagtggatgctcacagtcatctata 358
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tggtttatagttaagagtgtgccagtctaatacagaagtggatgctcacagtcatctata 272
Query: 359 ggatggaacacagggcccccagtgtaggagctagagaaagtacccaagagctgaaggg 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggatgaaacacagggcccccagtgtaggagctagagaaagtacccaagagctgaaggg 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
